Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2035 154 1e-32 seq4893 150 2e-31 seq88 145 7e-30 seq2403 132 4e-26 seq113 91.5 1e-13 >seq2035 Length=5329 Score = 154 bits (170), Expect = 1e-32 Identities = 175/233 (75%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||| || || || |||||||||||||| || || || || Sbjct 1019 CCACCACCACGCAGGCGGAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCC 1078 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 |||||||| | | || || ||||||||||| || || ||||||||||| ||||| | | Sbjct 1079 GAGAGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGG 1138 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | || |||||||||| ||| || ||| || | || | ||||||||||||| Sbjct 1139 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATTGTGTCGCTCGACT 1196 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 1197 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 1249 >seq4893 Length=312 Score = 150 bits (166), Expect = 2e-31 Identities = 164/214 (77%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| |||| ||||||||||||||| ||||| |||||| ||| || ||| |||| || Sbjct 297 CACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTCCTC 238 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | ||||||||| ||||| ||||| ||||| ||||||| |||| || |||||||||| Sbjct 237 CAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTG 178 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCG 41828 ||| || ||| ||| | | | ||||| ||| ||||||||||| ||| |||| Sbjct 177 GATCTTCGACTT-GACGTTGTCGATCGTGTCTGAGCT---CTCCACCTCCAGCGTAATCG 122 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || || ||||||||||| || ||||| Sbjct 121 TCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88 >seq88 Length=36327 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||| || || |||||||||||||||||||| |||||||| Sbjct 33114 GCCACCGCGGAGCCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 33055 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || | || ||||| ||||||||||| || ||||||||||| ||||| | || Sbjct 33054 CAAAGTCCGACCATCCTCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGG 32995 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| || ||| || |||| || | | | ||||| |||||| | Sbjct 32994 GATACCCTCCTTATCTTGGATCTTCGACTTC-ACATTGTCAATCGTGTCTGACGACTCAA 32936 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || |||||||| ||||| |||||||||||||| Sbjct 32935 CCTCCAATGTGATGGTCTTTCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | ||||| || || || ||||||||||| ||||| |||||||| Sbjct 33342 GCCGCCACGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGA 33283 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || | ||||||||| ||||| |||| ||||| ||||| | ||| Sbjct 33282 CAGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGG 33223 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| | |||| | ||| | | | || || || |||| Sbjct 33222 GATACCCTCCTTATCC-TGAATCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCA 33164 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| || ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 33163 CTTCCAGAGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 33114 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || ||||| ||||| |||||||| || || || || || Sbjct 32885 CCACCGCGCAGGCGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAA 32826 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||| || ||||| || || ||||||||||| ||||| | ||| Sbjct 32825 AGAGTGCGACCATCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGA 32766 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| |||| | | | |||||| |||||||| Sbjct 32765 ATACCCTCCTTGTCCTGGATCTTCGACTT-AACGTTGTCGATGGTGTCGGAAGACTCCAC 32707 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| ||||| || ||||| Sbjct 32706 CTCGAGGGTGATAGTCTTCCCGGTCAGGGTCTTGACGAAGATTTGCAT 32659 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||| || || ||||||||||| | || || | || || | |||||||||||| || Sbjct 32622 CTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATCTTCCAACTGCTTGCCGGCAAA 32563 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 ||||||||||| ||||| | || | || |||||||||| Sbjct 32562 AATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 32523 >seq2403 Length=4098 Score = 132 bits (146), Expect = 4e-26 Identities = 149/196 (76%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| ||||| ||||| ||||| | || |||||||| ||||| || || | Sbjct 2169 CCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGA 2228 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||||||||| ||||| | ||||| || |||||||||| ||| || ||| || | Sbjct 2229 TCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 2288 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || |||||||| || ||||| || Sbjct 2289 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCAC 2346 Query 41851 GAAAATCTGCA-TGTT 41865 ||| ||||||| |||| Sbjct 2347 GAAGATCTGCACTGTT 2362 >seq113 Length=33764 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || ||||||||||| ||||||| |||||| |||||| || ||| Sbjct 33102 CGCATCGCCCCCCGCTCCGGCCTCGCAGCCAAGCACTTCATCGACACGGGCGCGGGAGTC 33161 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 |||||||||||||||||||| ||||| | | || |||||||||| ||| Sbjct 33162 ATCGACGCCGACTACCGCGGCCCCGTCAAAGTGCTGCTGTTCAACCACGCCGA 33214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462269119163200