Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq2035 154 1e-32
seq4893 150 2e-31
seq88 145 7e-30
seq2403 132 4e-26
seq113 91.5 1e-13
>seq2035
Length=5329
Score = 154 bits (170), Expect = 1e-32
Identities = 175/233 (75%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || || || | ||| || || || |||||||||||||| || || || ||
Sbjct 1019 CCACCACCACGCAGGCGGAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCC 1078
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|||||||| | | || || ||||||||||| || || ||||||||||| ||||| | |
Sbjct 1079 GAGAGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGG 1138
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810
|| | || |||||||||| ||| || ||| || | || | |||||||||||||
Sbjct 1139 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATTGTGTCGCTCGACT 1196
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||| | || || || || ||||| || ||||| ||||| |||||||||
Sbjct 1197 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 1249
>seq4893
Length=312
Score = 150 bits (166), Expect = 2e-31
Identities = 164/214 (77%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||||| |||| ||||||||||||||| ||||| |||||| ||| || ||| |||| ||
Sbjct 297 CACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTCCTC 238
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
| ||||||||| ||||| ||||| ||||| ||||||| |||| || ||||||||||
Sbjct 237 CAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTG 178
Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCG 41828
||| || ||| ||| | | | ||||| ||| ||||||||||| ||| ||||
Sbjct 177 GATCTTCGACTT-GACGTTGTCGATCGTGTCTGAGCT---CTCCACCTCCAGCGTAATCG 122
Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || || || || ||||||||||| || |||||
Sbjct 121 TCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88
>seq88
Length=36327
Score = 145 bits (160), Expect = 7e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | |||| || || |||||||||||||||||||| ||||||||
Sbjct 33114 GCCACCGCGGAGCCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 33055
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| || || | || ||||| ||||||||||| || ||||||||||| ||||| | ||
Sbjct 33054 CAAAGTCCGACCATCCTCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGG 32995
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||| || ||| || |||| || | | | ||||| |||||| |
Sbjct 32994 GATACCCTCCTTATCTTGGATCTTCGACTTC-ACATTGTCAATCGTGTCTGACGACTCAA 32936
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || || || |||||||| ||||| ||||||||||||||
Sbjct 32935 CCTCCAATGTGATGGTCTTTCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887
Score = 132 bits (146), Expect = 4e-26
Identities = 169/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | ||||| || || || ||||||||||| ||||| ||||||||
Sbjct 33342 GCCGCCACGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGA 33283
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || | || || | ||||||||| ||||| |||| ||||| ||||| | |||
Sbjct 33282 CAGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGG 33223
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||| ||| ||| | |||| | ||| | | | || || || ||||
Sbjct 33222 GATACCCTCCTTATCC-TGAATCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCA 33164
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| |||| || ||||| || ||||| || ||||| ||||| |||||||||
Sbjct 33163 CTTCCAGAGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 33114
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | || || ||||| ||||| |||||||| || || || || ||
Sbjct 32885 CCACCGCGCAGGCGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAA 32826
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || ||||| || ||||| || || ||||||||||| ||||| | |||
Sbjct 32825 AGAGTGCGACCATCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGA 32766
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| |||| | | | |||||| ||||||||
Sbjct 32765 ATACCCTCCTTGTCCTGGATCTTCGACTT-AACGTTGTCGATGGTGTCGGAAGACTCCAC 32707
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || ||||| ||||| ||||| || |||||
Sbjct 32706 CTCGAGGGTGATAGTCTTCCCGGTCAGGGTCTTGACGAAGATTTGCAT 32659
Score = 82.4 bits (90), Expect = 7e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
|||||| || || ||||||||||| | || || | || || | |||||||||||| ||
Sbjct 32622 CTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATCTTCCAACTGCTTGCCGGCAAA 32563
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770
||||||||||| ||||| | || | || ||||||||||
Sbjct 32562 AATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 32523
>seq2403
Length=4098
Score = 132 bits (146), Expect = 4e-26
Identities = 149/196 (76%), Gaps = 5/196 (3%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||||||||| ||||| ||||| ||||| | || |||||||| ||||| || || |
Sbjct 2169 CCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGA 2228
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
|||||||||| ||||| | ||||| || |||||||||| ||| || ||| || |
Sbjct 2229 TCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 2288
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || |||||||| || ||||| ||
Sbjct 2289 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCAC 2346
Query 41851 GAAAATCTGCA-TGTT 41865
||| ||||||| ||||
Sbjct 2347 GAAGATCTGCACTGTT 2362
>seq113
Length=33764
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| ||||| || || ||||||||||| ||||||| |||||| |||||| || |||
Sbjct 33102 CGCATCGCCCCCCGCTCCGGCCTCGCAGCCAAGCACTTCATCGACACGGGCGCGGGAGTC 33161
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|||||||||||||||||||| ||||| | | || |||||||||| |||
Sbjct 33162 ATCGACGCCGACTACCGCGGCCCCGTCAAAGTGCTGCTGTTCAACCACGCCGA 33214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462269119163200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |