Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 134 3e-26 >seq4 Length=2525909 Score = 134 bits (148), Expect = 3e-26 Identities = 304/453 (67%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 |||||| |||| || ||||||| | || || || || | || || || |||| Sbjct 2286881 TTTGCCCAGCGCCTGGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTTTC 2286940 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 | ||||||| |||||||| || || | ||||||||||| | || |||||| Sbjct 2286941 GCCTCCATCTTCTGGCTGCGCAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAACGAG 2287000 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351 | ||| || |||||||| || || || | | || | | || ||| || | || Sbjct 2287001 CTGATCTCGCGTGACGAGGGCCTGCA-CACCGACTTTGCCTGTCTGCTGTTCTCGCACCT 2287059 Query 230352 CCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 | ||||| | || | || | ||| | || ||||| || || || || | | Sbjct 2287060 C---AACAACCGCCCCAGCAAGCAGCTAGTCGAGCAGATCATCACCGATGCTGTCGTCAT 2287116 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 || ||||||||| | || || | || ||| |||| | ||||||||||| || || Sbjct 2287117 TGAGAAGGAGTTCCTGACCGAGGCCCTGCCCTGTGGCCTCCTCGGCATGAACGCCGACCT 2287176 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| |||||||| || ||||| ||||||||| | | || || || || |||| || Sbjct 2287177 CATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGAAACGAAAA 2287236 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 || ||| | | | |||||||||| ||||||||| ||| ||||| || ||||| Sbjct 2287237 GGTCTACCGCGCCACCAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGCGGCAAGAC 2287296 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCA 230621 |||||||||||| ||||| || | ||||| || Sbjct 2287297 CAACTTCTTCGAGAAGCGCGTGGGCGACTACCA 2287329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823837359560