Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4 136 4e-27 >seq4 Length=2525909 Score = 136 bits (150), Expect = 4e-27 Identities = 555/863 (64%), Gaps = 35/863 (4%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| |||| ||||| || ||||| ||||| || ||||| | || || || |||| Sbjct 2287331 TTTGGTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCT 2287272 Query 16734 CCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 |||| || ||||| || || || || | | | |||| | | || || || ||| Sbjct 2287271 CCATAAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTT--CCGAGGGCGACGAG 2287214 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 | | || || || || || || || || ||| | ||| |||||| || | || Sbjct 2287213 CAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGGAG 2287154 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 | || || || || |||| || || || ||| || || || || || | || | Sbjct 2287153 GCCACAGGGCAGGGCCTCGGTCAGGAACTCCTT-CTCAATGACGACAGCATCGGTGATGA 2287095 Query 16911 T-------ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGA 16963 | |||||| || | || || |||| |||| | | || |||| |||| Sbjct 2287094 TCTGCTCGACTAGCTGCTTG---CTGGGGCGGT---TGTTGAGG-TGCGAGAACAGCAGA 2287042 Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || || || ||| || | |||||||| | ||| || ||||| || || |||| Sbjct 2287041 CAGGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 2286982 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || ||||| || || || | ||| || || | |||||| | || || ||||| Sbjct 2286981 CCAGGCATGAGGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAG 2286922 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || |||||||||| ||||| |||| | || | ||| | |||| || |||| Sbjct 2286921 ATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGGTCGACTCCTTGTCGGTG 2286862 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 ||||| || | |||| ||||| || | ||||| || || || ||||| || Sbjct 2286861 ATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTG 2286802 Query 17204 AATAATTTCTCTTTTTCCTGT-AGG--TCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 || | | | ||| ||| || | || || || ||||| || || |||| Sbjct 2286801 AAGAGGTAGG---TGCGCTGCGAGGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTAC 2286745 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 | |||||||| ||||||||||| ||||| || ||||| ||||| ||||| || | Sbjct 2286744 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGG 2286685 Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 || || || || || |||| || || | || || ||||| |||||||||||| ||| Sbjct 2286684 ATCTGGACCTCGCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCG 2286625 Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG---- 17436 ||||| || || | || ||| ||||| || | ||| ||| ||| | ||| Sbjct 2286624 GCGAAGAAGGCGAGGATGTGCGAGATGAAGTACTGTTCATCC-TTGT--TCAGGCGGTTG 2286568 Query 17437 --CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 |||||| | | || ||||| | || | ||| |||| ||||| || ||| | Sbjct 2286567 TTCCAGTCGTGAAGGTCCTTGGACAGGTCAATTTCCTCGGCAGTCCAGAAGGACGCCTCG 2286508 Query 17495 GCCTTTTTATACATATTCCAAAT 17517 ||||| || ||||| | ||| || Sbjct 2286507 GCCTTCTTGTACATCTGCCAGAT 2286485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545522368160