Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq4 136 4e-27
>seq4
Length=2525909
Score = 136 bits (150), Expect = 4e-27
Identities = 555/863 (64%), Gaps = 35/863 (4%)
Strand=Plus/Minus
Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733
||||||| |||| ||||| || ||||| ||||| || ||||| | || || || ||||
Sbjct 2287331 TTTGGTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCT 2287272
Query 16734 CCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791
|||| || ||||| || || || || | | | |||| | | || || || |||
Sbjct 2287271 CCATAAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTT--CCGAGGGCGACGAG 2287214
Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851
| | || || || || || || || || ||| | ||| |||||| || | ||
Sbjct 2287213 CAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGGAG 2287154
Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910
| || || || || |||| || || || ||| || || || || || | || |
Sbjct 2287153 GCCACAGGGCAGGGCCTCGGTCAGGAACTCCTT-CTCAATGACGACAGCATCGGTGATGA 2287095
Query 16911 T-------ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGA 16963
| |||||| || | || || |||| |||| | | || |||| ||||
Sbjct 2287094 TCTGCTCGACTAGCTGCTTG---CTGGGGCGGT---TGTTGAGG-TGCGAGAACAGCAGA 2287042
Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023
|| || || ||| || | |||||||| | ||| || ||||| || || ||||
Sbjct 2287041 CAGGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 2286982
Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083
|| ||||| || || || | ||| || || | |||||| | || || |||||
Sbjct 2286981 CCAGGCATGAGGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAG 2286922
Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143
|| |||||||||| ||||| |||| | || | ||| | |||| || ||||
Sbjct 2286921 ATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGGTCGACTCCTTGTCGGTG 2286862
Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203
||||| || | |||| ||||| || | ||||| || || || ||||| ||
Sbjct 2286861 ATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTG 2286802
Query 17204 AATAATTTCTCTTTTTCCTGT-AGG--TCGATTATATACGTATCGATGAGTAGGCTGTAC 17260
|| | | | ||| ||| || | || || || ||||| || || ||||
Sbjct 2286801 AAGAGGTAGG---TGCGCTGCGAGGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTAC 2286745
Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320
| |||||||| ||||||||||| ||||| || ||||| ||||| ||||| || |
Sbjct 2286744 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGG 2286685
Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380
|| || || || || |||| || || | || || ||||| |||||||||||| |||
Sbjct 2286684 ATCTGGACCTCGCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCG 2286625
Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG---- 17436
||||| || || | || ||| ||||| || | ||| ||| ||| | |||
Sbjct 2286624 GCGAAGAAGGCGAGGATGTGCGAGATGAAGTACTGTTCATCC-TTGT--TCAGGCGGTTG 2286568
Query 17437 --CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494
|||||| | | || ||||| | || | ||| |||| ||||| || ||| |
Sbjct 2286567 TTCCAGTCGTGAAGGTCCTTGGACAGGTCAATTTCCTCGGCAGTCCAGAAGGACGCCTCG 2286508
Query 17495 GCCTTTTTATACATATTCCAAAT 17517
||||| || ||||| | ||| ||
Sbjct 2286507 GCCTTCTTGTACATCTGCCAGAT 2286485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545522368160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |