Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3 122 7e-23 seq8 100 2e-16 seq10 96.9 3e-15 seq5 84.2 2e-11 >seq3 Length=3916844 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | ||||| ||||||||||||||||||||| ||||| | Sbjct 1905209 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 1905268 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || ||| | || || | |||||||||| ||| Sbjct 1905269 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 1905328 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | ||| | Sbjct 1905329 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGACT 1905388 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| || || | || ||||| || |||||||| Sbjct 1905389 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||||| ||||||||| || || ||||| ||||| | Sbjct 1905437 CCACCACGGAGACGGAGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAA 1905496 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || ||| | || || | |||||||||| || Sbjct 1905497 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 1905556 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | ||| Sbjct 1905557 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAAGTTTCCACC 1905616 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| |||||||||||||| Sbjct 1905617 TCAAGGGTGATGGTCTTGCCGGT 1905639 >seq8 Length=1110981 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || ||||| ||||| | | Sbjct 478883 CCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 478942 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| ||| | || || | |||||||||| ||| Sbjct 478943 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 479002 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | ||| Sbjct 479003 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 479062 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAA 21166 || | |||||||||||| || || | || ||||| || Sbjct 479063 TCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 479100 >seq10 Length=988720 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 20981 GGACT--CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| |||| || ||||| ||||| | |||||| || ||||||||||||| || || Sbjct 887140 GGACTAACCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCA 887199 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||||||| ||| | ||| |||||||| ||||| || Sbjct 887200 GCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 887259 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| ||| || || ||| || | |||||| ||||| || || | || Sbjct 887260 ACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTC 887319 Query 21159 TTGACAAATATTTGCATTTTGA 21180 ||||| || || ||||| |||| Sbjct 887320 TTGACGAAAATCTGCATCTTGA 887341 >seq5 Length=2223104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/136 (75%), Gaps = 6/136 (4%) Strand=Plus/Plus Query 38728 CGGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTG 38787 ||||||||| ||||| ||| | ||| ||| ||||| | | |||| | || |||||||| Sbjct 2071064 CGGCGGCGTCGGGCTCAACATCACCAGCGCCAACCGCGTGGTCATCGTCGACCCGCACTG 2071123 Query 38788 GAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAGCG 38847 |||||| | || ||||||||||| |||||| ||||||| |||||| | ||| Sbjct 2071124 GAACCCCGCGCTGGACCTGCAGGCGCAGGACCGCGCGTACCGCATCGGCCAG---ACGCG 2071180 Query 38848 C-ACGT--ACGTGTAC 38860 | |||| |||||||| Sbjct 2071181 CGACGTCGACGTGTAC 2071196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259138244592