Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq3 122 7e-23
seq8 100 2e-16
seq10 96.9 3e-15
seq5 84.2 2e-11
>seq3
Length=3916844
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | ||| || | ||||| ||||||||||||||||||||| ||||| |
Sbjct 1905209 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 1905268
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| ||||| || || ||| | || || | |||||||||| |||
Sbjct 1905269 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 1905328
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | | ||| || || | ||| |
Sbjct 1905329 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGACT 1905388
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || |||||||| || || | || ||||| || ||||||||
Sbjct 1905389 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| || | ||||| ||||||||| || || ||||| ||||| |
Sbjct 1905437 CCACCACGGAGACGGAGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAA 1905496
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| ||||| || || ||| | || || | |||||||||| ||
Sbjct 1905497 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 1905556
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | | ||| || || | |||
Sbjct 1905557 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAAGTTTCCACC 1905616
Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151
|| | ||| ||||||||||||||
Sbjct 1905617 TCAAGGGTGATGGTCTTGCCGGT 1905639
>seq8
Length=1110981
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || |||| || | ||||||||||| || ||||| ||||| | |
Sbjct 478883 CCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 478942
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| ||||| ||||| ||| | || || | |||||||||| |||
Sbjct 478943 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 479002
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | | ||| || || | |||
Sbjct 479003 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 479062
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAA 21166
|| | |||||||||||| || || | || ||||| ||
Sbjct 479063 TCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 479100
>seq10
Length=988720
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/202 (71%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 20981 GGACT--CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||| |||| || ||||| ||||| | |||||| || ||||||||||||| || ||
Sbjct 887140 GGACTAACCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCA 887199
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
|| | || || | |||||||||| ||| | ||| |||||||| ||||| ||
Sbjct 887200 GCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 887259
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | ||| ||| || || ||| || | |||||| ||||| || || | ||
Sbjct 887260 ACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTC 887319
Query 21159 TTGACAAATATTTGCATTTTGA 21180
||||| || || ||||| ||||
Sbjct 887320 TTGACGAAAATCTGCATCTTGA 887341
>seq5
Length=2223104
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/136 (75%), Gaps = 6/136 (4%)
Strand=Plus/Plus
Query 38728 CGGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTG 38787
||||||||| ||||| ||| | ||| ||| ||||| | | |||| | || ||||||||
Sbjct 2071064 CGGCGGCGTCGGGCTCAACATCACCAGCGCCAACCGCGTGGTCATCGTCGACCCGCACTG 2071123
Query 38788 GAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAGCG 38847
|||||| | || ||||||||||| |||||| ||||||| |||||| | |||
Sbjct 2071124 GAACCCCGCGCTGGACCTGCAGGCGCAGGACCGCGCGTACCGCATCGGCCAG---ACGCG 2071180
Query 38848 C-ACGT--ACGTGTAC 38860
| |||| ||||||||
Sbjct 2071181 CGACGTCGACGTGTAC 2071196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422259138244592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |