Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4 439 3e-118
seq3 132 5e-26
seq10 123 3e-23
seq8 123 3e-23
>seq4
Length=2525909
Score = 439 bits (486), Expect = 3e-118
Identities = 587/809 (73%), Gaps = 13/809 (2%)
Strand=Plus/Plus
Query 116629 CCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688
|||| | || |||| |||||||| |||||||||||||| |||||||| | |||||| |
Sbjct 2286478 CCCGCAGATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAAAT 2286537
Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTT 116745
||||||||||||||| ||||||| | ||| ||||| | | || | | ||
Sbjct 2286538 TGACCTGTCCAAGGACCTTCACGACTGGAACAACCGCCTGAACAAGGATGAACAGTACTT 2286597
Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805
|||| |||| | || ||||| |||||||| ||||||||||||||||||||| || ||
Sbjct 2286598 CATCTCGCACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAACCTCGT 2286657
Query 116806 CGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865
|||||||||| | ||||| ||| | ||||||| || |||||||||||||| |||||
Sbjct 2286658 CGAGCGTTTCTCCGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 2286717
Query 116866 CGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GC 116921
| ||||||||| | ||||| || | ||| ||| || |||||||| ||| | |
Sbjct 2286718 CATGATGGAGAACATCCACTCCGAGACGTACTCGCTGCTGATCGACACTTACATCAAGGA 2286777
Query 116922 GCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAG 116981
|| | ||| | | | | || | | || ||||||||||| || || |||||| ||
Sbjct 2286778 GC-CCTCGCA-GCGCACCTAC--CTCTTCAACGCCATCGATACCATCCCGTGCATCCGCC 2286833
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||| ||||| || |||||| ||| || ||| | |||| | | ||||||
Sbjct 2286834 GCAAGGCCGACTGGGCCCTCAAGTGGATCACCGACAAGGAGTCGACCTTTGCCCAGCGCC 2286893
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| ||||| || |||||||||||| ||||||| |||||| ||||||| |||| || |
Sbjct 2286894 TGGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTTTCGCCTCCATCTTCT 2286953
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| || |||||||||||||| |||||||| ||| ||||||||| ||||| | |
Sbjct 2286954 GGCTGCGCAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTG 2287013
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
||||||| ||||| ||||||||||||| |||||||| ||| | | || || |
Sbjct 2287014 ACGAGGGCCTGCACACCGACTTTGCCTGTCTGCTGTTCTCGCACCTCAACAACCGCCCCA 2287073
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| | || ||| | ||||| ||||||| || |||| ||| ||| || ||||| |
Sbjct 2287074 GCAAGCAGCTAGTCGAGCAGATCATCACCGATGCTGTCGTCATTGAGAAGGAGTTCCTGA 2287133
Query 117282 CCGAAGCGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340
|||| || ||| || ||| | || || || | || ||| ||| ||| |||||
Sbjct 2287134 CCGAGGCCCTGCCCTGTG-GCCTCCTCGGCATGAACGCCGACCTCATGAAGCAGTACATT 2287192
Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400
||||||||||||||| | ||||| ||| || | || ||| |||| | | ||
Sbjct 2287193 GAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGAAACGAAAAGGTCTACCGCGCCACC 2287252
Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC 117429
||||| | ||||||||| | ||||||
Sbjct 2287253 AACCCCTTTGACTTTATGGAGAACATCTC 2287281
>seq3
Length=3916844
Score = 132 bits (146), Expect = 5e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || || |||||||| |||| ||||| | ||
Sbjct 1905435 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCC 1905376
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || || | ||||| |||||||||||| |||||||
Sbjct 1905375 GACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 1905317
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || || || ||||| || || | || ||||| |||||||||
Sbjct 1905316 GCAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAA 1905257
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| || |||||| |||| |||||||| ||
Sbjct 1905256 CATTCAAAAGGAGTCCACTCTGCATCTCGT 1905227
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || || || || || ||||| || |||| ||||| || | || | | |
Sbjct 1905140 TCGTCAAGACCCTGACTGGAAAGACCATAACTCTCGAAGTCGAGTCCTCTGATACCATTG 1905081
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| ||||| || || | ||||| |||||||||||| |||||||||| || |||
Sbjct 1905080 ACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTC 1905022
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|| | ||| ||||| ||||| || || | ||||| ||| ||||||||||||||||||
Sbjct 1905021 ATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTCTCAGACTACAACATCCAGAAG 1904962
Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|| | || |||||||| || |||| || | || |||
Sbjct 1904961 GAATCTACTCTGCATCTGGTTCTGCGTCTGCGTGGAGGC 1904923
Score = 113 bits (124), Expect = 5e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| ||||||||| | || || ||| | |||||| | | | |||||
Sbjct 1905639 ACCGGCAAGACCATCACCCTTGAGGTGGAAACTTCCGACACGATCGACAATGTCAAGTCC 1905580
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| || | ||||| ||||||||||| |||||||||| || || |||| || || ||
Sbjct 1905579 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTGATCTTTGCTGGAAAG 1905520
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || || | || ||||| |||||||||||||||||| ||| |||| ||||||
Sbjct 1905519 CAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATCCAGAAAGAGTCCACTCTGCAT 1905460
Query 40894 CTAGT 40898
|| ||
Sbjct 1905459 CTCGT 1905455
>seq10
Length=988720
Score = 123 bits (136), Expect = 3e-23
Identities = 143/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || || ||||| || || || ||| |||| || || ||
Sbjct 887339 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 887280
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | ||||| || |||| ||||| |||||||| ||| |||||
Sbjct 887279 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 887220
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| ||| || || |||||||| |||| |||||||| ||||||
Sbjct 887219 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTAC 887160
Query 40867 AACATCCAGAAGG 40879
|||||||||||||
Sbjct 887159 AACATCCAGAAGG 887147
>seq8
Length=1110981
Score = 123 bits (136), Expect = 3e-23
Identities = 153/207 (74%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| | | |||| |
Sbjct 479100 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTAGAGGTCGAGTCTTCGGACACGATC 479041
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| ||||| || || | ||||| |||||||| ||| |||||||||| || ||
Sbjct 479040 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 478982
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| || ||||| ||||| || || | |||||||| ||||||||||||||||||
Sbjct 478981 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 478922
Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||| |||| || || || || ||||
Sbjct 478921 GGAGTCCACCCTCCACCTGGTTCTGCG 478895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219122717120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |