Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 439 3e-118 seq3 132 5e-26 seq10 123 3e-23 seq8 123 3e-23 >seq4 Length=2525909 Score = 439 bits (486), Expect = 3e-118 Identities = 587/809 (73%), Gaps = 13/809 (2%) Strand=Plus/Plus Query 116629 CCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 |||| | || |||| |||||||| |||||||||||||| |||||||| | |||||| | Sbjct 2286478 CCCGCAGATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAAAT 2286537 Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTT 116745 ||||||||||||||| ||||||| | ||| ||||| | | || | | || Sbjct 2286538 TGACCTGTCCAAGGACCTTCACGACTGGAACAACCGCCTGAACAAGGATGAACAGTACTT 2286597 Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 |||| |||| | || ||||| |||||||| ||||||||||||||||||||| || || Sbjct 2286598 CATCTCGCACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAACCTCGT 2286657 Query 116806 CGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865 |||||||||| | ||||| ||| | ||||||| || |||||||||||||| ||||| Sbjct 2286658 CGAGCGTTTCTCCGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 2286717 Query 116866 CGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GC 116921 | ||||||||| | ||||| || | ||| ||| || |||||||| ||| | | Sbjct 2286718 CATGATGGAGAACATCCACTCCGAGACGTACTCGCTGCTGATCGACACTTACATCAAGGA 2286777 Query 116922 GCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAG 116981 || | ||| | | | | || | | || ||||||||||| || || |||||| || Sbjct 2286778 GC-CCTCGCA-GCGCACCTAC--CTCTTCAACGCCATCGATACCATCCCGTGCATCCGCC 2286833 Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||| ||||| || |||||| ||| || ||| | |||| | | |||||| Sbjct 2286834 GCAAGGCCGACTGGGCCCTCAAGTGGATCACCGACAAGGAGTCGACCTTTGCCCAGCGCC 2286893 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || |||||||||||| ||||||| |||||| ||||||| |||| || | Sbjct 2286894 TGGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTTTCGCCTCCATCTTCT 2286953 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| || |||||||||||||| |||||||| ||| ||||||||| ||||| | | Sbjct 2286954 GGCTGCGCAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTG 2287013 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||| ||||| ||||||||||||| |||||||| ||| | | || || | Sbjct 2287014 ACGAGGGCCTGCACACCGACTTTGCCTGTCTGCTGTTCTCGCACCTCAACAACCGCCCCA 2287073 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | || ||| | ||||| ||||||| || |||| ||| ||| || ||||| | Sbjct 2287074 GCAAGCAGCTAGTCGAGCAGATCATCACCGATGCTGTCGTCATTGAGAAGGAGTTCCTGA 2287133 Query 117282 CCGAAGCGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 |||| || ||| || ||| | || || || | || ||| ||| ||| ||||| Sbjct 2287134 CCGAGGCCCTGCCCTGTG-GCCTCCTCGGCATGAACGCCGACCTCATGAAGCAGTACATT 2287192 Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400 ||||||||||||||| | ||||| ||| || | || ||| |||| | | || Sbjct 2287193 GAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGAAACGAAAAGGTCTACCGCGCCACC 2287252 Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC 117429 ||||| | ||||||||| | |||||| Sbjct 2287253 AACCCCTTTGACTTTATGGAGAACATCTC 2287281 >seq3 Length=3916844 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || |||||||| |||| ||||| | || Sbjct 1905435 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCC 1905376 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| |||||||||||| ||||||| Sbjct 1905375 GACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 1905317 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || ||||| || || | || ||||| ||||||||| Sbjct 1905316 GCAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAA 1905257 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || |||||| |||| |||||||| || Sbjct 1905256 CATTCAAAAGGAGTCCACTCTGCATCTCGT 1905227 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || || || ||||| || |||| ||||| || | || | | | Sbjct 1905140 TCGTCAAGACCCTGACTGGAAAGACCATAACTCTCGAAGTCGAGTCCTCTGATACCATTG 1905081 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| |||||||||||| |||||||||| || ||| Sbjct 1905080 ACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTC 1905022 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| ||||| ||||| || || | ||||| ||| |||||||||||||||||| Sbjct 1905021 ATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTCTCAGACTACAACATCCAGAAG 1904962 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || | || |||||||| || |||| || | || ||| Sbjct 1904961 GAATCTACTCTGCATCTGGTTCTGCGTCTGCGTGGAGGC 1904923 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| | || || ||| | |||||| | | | ||||| Sbjct 1905639 ACCGGCAAGACCATCACCCTTGAGGTGGAAACTTCCGACACGATCGACAATGTCAAGTCC 1905580 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| ||||||||||| |||||||||| || || |||| || || || Sbjct 1905579 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTGATCTTTGCTGGAAAG 1905520 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | || ||||| |||||||||||||||||| ||| |||| |||||| Sbjct 1905519 CAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATCCAGAAAGAGTCCACTCTGCAT 1905460 Query 40894 CTAGT 40898 || || Sbjct 1905459 CTCGT 1905455 >seq10 Length=988720 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || || ||| |||| || || || Sbjct 887339 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 887280 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | ||||| || |||| ||||| |||||||| ||| ||||| Sbjct 887279 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 887220 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || |||||||| |||| |||||||| |||||| Sbjct 887219 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTAC 887160 Query 40867 AACATCCAGAAGG 40879 ||||||||||||| Sbjct 887159 AACATCCAGAAGG 887147 >seq8 Length=1110981 Score = 123 bits (136), Expect = 3e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| | | |||| | Sbjct 479100 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTAGAGGTCGAGTCTTCGGACACGATC 479041 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 479040 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 478982 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| || ||||| ||||| || || | |||||||| |||||||||||||||||| Sbjct 478981 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 478922 Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| |||| || || || || |||| Sbjct 478921 GGAGTCCACCCTCCACCTGGTTCTGCG 478895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219122717120