Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10 109 5e-19 seq8 105 6e-18 seq3 98.7 9e-16 >seq10 Length=988720 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || || ||||| ||||| ||||| || |||||| |||| Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| ||| || || || | ||| Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||| ||||||| ||| | ||| || || || || || || || ||| Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 887329 ATCTGCAT 887336 >seq8 Length=1110981 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||| || ||||| |||||| Sbjct 478901 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 478960 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || |||||||||||||| Sbjct 478961 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 479020 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| ||||||||| | ||| | || || Sbjct 479021 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCTAGGGTAATGGTCTTA 479080 Query 118710 CCGGTCAGAGTTTTTACAAAA 118730 || ||||| || || || ||| Sbjct 479081 CCCGTCAGGGTCTTGACGAAA 479101 >seq3 Length=3916844 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| |||||||||||||| ||| | || || |||||| ||||| |||||| Sbjct 1905239 GTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCA 1905298 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || |||||||| || || || |||||||||||||| || || || Sbjct 1905299 GCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1905358 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | |||||| |||| || | || || || ||||| || Sbjct 1905359 ACGTTGTCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATGGTCTTTCCAGTCAGGGTC 1905418 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 1905419 TTGACGAAGATTTGCAT 1905435 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || || |||||||| || | |||||| |||||| ||||| || ||| Sbjct 1904954 GTAGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGACCATCCTCAAGCTGCTTGCCA 1905013 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | |||||||||||||| || || || ||||||||||||||| || || || Sbjct 1905014 GCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGGACTTG 1905073 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | | |||||| |||| || | || || || ||||| || Sbjct 1905074 ACGTTGTCAATGGTATCAGAGGACTCGACTTCGAGAGTTATGGTCTTTCCAGTCAGGGTC 1905133 Query 118722 TTTAC 118726 || || Sbjct 1905134 TTGAC 1905138 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| ||| | || || |||||| ||||| |||||| Sbjct 1905467 GTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCA 1905526 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || |||||||| || ||||| |||||||||||||| || || || Sbjct 1905527 GCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1905586 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | |||| ||||| | | || ||||| | ||| | || |||||||||| Sbjct 1905587 ACATTGTCGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 1905641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830336552304