Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 7e-15 >seq8 Length=1110981 Score = 96.9 bits (106), Expect = 7e-15 Identities = 245/366 (67%), Gaps = 14/366 (4%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||||| ||||| || |||||| || || || || || | || |||||| Sbjct 325302 TACCAGTACTTTGGCTTCAAGACCCTGGAGCGCTCCTACCTGCTTAAGCTCGACGGCAAG 325243 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 || || || || ||||||||| | ||||| || || ||||| ||| || |||| Sbjct 325242 ATTGTCGAGCGTCCCCAGCACATGATTATGCGTGTTGCCGTCGGCATTTG---GGGTGAC 325186 Query 248938 ATAGAG-AGCGTG--CTCGAGACGTACACCGGAATGA-GTGAACGCTGGATGACACATGC 248993 | | | |||||| |||||||| |||| | ||| | | | | | | || ||||| Sbjct 325185 AATGTGGAGCGTGTTCTCGAGACTTACAACCTCATGTCGAGCAAGTTCTTT-ACCCATGC 325127 Query 248994 CACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCT 249053 | || || |||||||||||||||||| | |||||| || |||||||| | Sbjct 325126 GTCTCCCACTCTCTTCAACGCCGGTACCCCTCAGGCCCAGCTGTCTTCATGCTTTCTAGT 325067 Query 249054 TGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAA 249110 | |||| | |||||| | || |||||||| || || || | |||| || | Sbjct 325066 CGACATGAAGGACGACAGCATTGAGGGCATTTACGATACCCTCA---AGACTTGTGCTAT 325010 Query 249111 GATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTC 249170 ||| || || | || ||||| ||||||||| |||| | ||| || || | || || Sbjct 325009 GATCTCCAAGATGGCTGGCGGCATCGGTCTCAACGTCCACCGCATTCGTGCCACTGGCTC 324950 Query 249171 GTACAT 249176 ||||| Sbjct 324949 CTACAT 324944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766234908416