Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8 394 8e-105 seq4 241 1e-58 seq10 102 7e-17 seq3 102 7e-17 >seq8 Length=1110981 Score = 394 bits (436), Expect = 8e-105 Identities = 1235/1896 (65%), Gaps = 32/1896 (2%) Strand=Plus/Plus Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGG---CGTTTGCGGCCGGTTTGGTGCGAAGATA 22155 ||| | || |||||| |||||||| || | || || ||| || || || || || Sbjct 323458 GGCCGCCTGGTCCACCGTAAACTGGATAGGAGCGGCAGCAGCCTGT---GTACGCAGGTA 323514 Query 22156 ATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCC 22215 |||||||| ||||| ||||||| |||||| | |||||| || || | || || Sbjct 323515 GTACATGCCAGTCTTAAGACCCAGCTTCCAGCCTGCAAAATGCATGCTGGTGATCTTACC 323574 Query 22216 ATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCG 22275 | || | ||||| | ||||| ||||| ||| || ||||| || || || Sbjct 323575 CATGGTGGGGTCCTTCATGTGAATATTGAGGGACTGGGACTGGTCAATAAAGGCACCGCG 323634 Query 22276 ATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTG 22335 ||||| ||||| | | | |||||| ||| |||||||| || |||||||| || Sbjct 323635 GTCGGCAGCCATCTGAACAACCGTACGCTGCGAAATTTCCCACACCGTCTTGTATAGCGC 323694 Query 22336 CCTGATCTCTAACGGTATCGATTC-GATCCTCTGGACGGACCCGTTATTGTGTATGATCA 22394 | |||| || || || | | | ||| | |||| ||| ||||| | | |||||| Sbjct 323695 CTTGATATCCGTGGGAAT-GCTGCTGATATTTTGGATGGAGCCGTTGTCGGCAATGATCC 323753 Query 22395 AATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGT 22454 || || || |||| ||||| || | | || | || | ||| | ||| Sbjct 323754 GGTTCTTCATGTTATCAGACCACAGGCCAAGGTCGACAAGGTCGCGCAGCAGCCAAGGGT 323813 Query 22455 TCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACGGT 22513 | || || || |||||||||| ||||| | ||||| |||||||||||||| ||| | || Sbjct 323814 TGACAACCTGGAACTCGCCGG-CAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGGGC 323872 Query 22514 TCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAAC 22573 || || | || ||||| ||||| ||||| | || || || ||||| || || | | Sbjct 323873 TCAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAACC 323932 Query 22574 AGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCAC 22633 || || ||||| | | ||||||| ||| || |||||| | ||||||||| Sbjct 323933 AGGAGAGAGTTGCGGACACCGTGCTGCTTAATCTTCTCCTTGAGGGAAGTCCAGTCCCAA 323992 Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCG 22691 |||||| |||||||||| ||||||| || |||||| | ||| |||| | || Sbjct 323993 AGATCGCTGGGCGTCACAT---CCCACATGTCAAATTGCAGGATGCCCTGCGAGAC--CG 324047 Query 22692 GGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCA 22751 | ||| || || || ||| | || | || ||||| || ||| || Sbjct 324048 GCGAGCCCTCATAAGTAGAGTATGTGCCCTCAGTCTGGGCAATCTCCATTGAGGCCGTCA 324107 Query 22752 ACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATT--CG-GCGGCGGCGACGC 22808 ||| ||| || || ||||| || || | |||||||| | || || ||| || | Sbjct 324108 GCGCAGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTGACGAGCCTCGG-GAGAC 324166 Query 22809 TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGA 22868 | | | ||||| |||| || ||| || || |||| |||||| || || | ||| | Sbjct 324167 T--CAAAAGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACACCAA 324224 Query 22869 TCGGTCGGTTTTTCAGATTCGACACTTTT--GCCTCGGGCAAAGGATACCAATTCGAATC 22926 |||| |||| || || | || | ||||| | | ||| || ||| ||| Sbjct 324225 TCGGGCGGTGGCGCATGTTG--CTGTTGTAGGCCTCCGTGACAGGGTAGTGGTTCACATC 324282 Query 22927 GATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTC 22986 || | | ||||| ||| | | || | | || | ||||||| Sbjct 324283 AATGATGCGGTTCAGGTTGCGGACAACGACCTGTGTGACTTCATGAAGCTTTCCAAAGTC 324342 Query 22987 GTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATAC 23043 ||| ||||| ||||| ||||||| | | ||| | ||||| || ||||| || Sbjct 324343 GTACTCGCCCTTGTTGTAGTCAACAAATGAGGGCAGGGCAAGAGAGGCCAGGTTGCACAC 324402 Query 23044 GGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTAT 23103 || ||||| || || |||||| | ||| || || || || ||| | || Sbjct 324403 AGCAACCTCATCGGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGAAT 324462 Query 23104 CGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGG 23163 || |||| || |||||||||| || || ||||| |||||||| ||||| | || Sbjct 324463 GGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTGTCCTTGTAAAGCATAAAGGG 324522 Query 23164 CGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACAC 23222 |||| |||||| ||| | ||| | || || ||||| ||||||| | || || Sbjct 324523 ATTGCCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGAGCTTTGATAAC 324582 Query 23223 GTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGT 23282 || || |||||| | |||||||||| ||||| || ||||| || | |||| Sbjct 324583 CATGCGGCCACG-GCCTTCCTTTTCGTACTTTTCGTACAGAGCTTCAAACTCATCGCCGT 324641 Query 23283 AACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTT 23342 | ||||| ||||||||||| | | | || ||||| ||| |||| || || | Sbjct 324642 AGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCCTCGTTCTTCT 324701 Query 23343 CAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCA 23402 |||| || |||| || || || ||||| ||||| ||||| |||||||| || | Sbjct 324702 CAACACGCTTCATGAACAGGTCGCAGATCCACAGAGCCAGGAACAAGTCGCGGGCACGAA 324761 Query 23403 CCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACG 23462 |||| || || || |||||| || || | || || |||||||| || ||||| | Sbjct 324762 CCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAGGAACTCAAACACGTCGGCGTGCCAGG 324821 Query 23463 GCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGG 23522 | || ||||| | ||||| || || || | ||| ||||| ||||| || || || |||| Sbjct 324822 GTTCCAGGTATATAGCAAAGGCACCGGGCCGCTTGTTGCCACCCTGGTCAACATAGCGGG 324881 Query 23523 CCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCG 23582 ||||||||||| | || | | ||| || || | ||||||||| | ||| ||| | Sbjct 324882 CCGTGTTGTTGAAGACACGCAACATAGGAACAATACCGTTGGAGGTACCGTTGGTGCCGG 324941 Query 23583 CCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATT 23642 | | || || | || |||| | ||| |||| || ||| ||||| || || | Sbjct 324942 CAATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGACCGATGCCGCCAGCCATCT 325001 Query 23643 TCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGG 23702 | || ||||| || || || || || ||||| |||||||| |||||||| || || Sbjct 325002 TGGAGATCATAGCACAAGTCTTGAGGGTATCGTAAATGCCCTCAATGCTGTCGTCCTTCA 325061 Query 23703 TCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCG 23762 | |||| | || || ||||||| || || | || ||| |||| ||| || || | Sbjct 325062 TGTCGACTAGAAAGCATGAAGACAGCTGGGCCTGAGGGGTACCGGCGTTGAAGAGAGTGG 325121 Query 23763 GGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAA 23822 | || || |||||| | ||||||| || ||||| || |||| | || | Sbjct 325122 GAGACGCATGGGTAAAGAACTTGCTCGACATGAGGTTGTAAGTCTCGAGAACACGCTCCA 325181 Query 23823 TGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCG 23882 | || || || |||| ||| || ||||| ||||||| || || | |||||| Sbjct 325182 CATTGTCACCCCAAATGCCGACGGCAACACGCATAATCATGTGCTGGGGACGCTCGACAA 325241 Query 23883 TGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCAT 23942 | ||||| | || | ||| || || || | || || || || ||||| || | | Sbjct 325242 TCTTGCCGTCGAGCTTAAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGT 325301 Query 23943 AGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 |||| |||||||| |||| ||| ||||| |||| || Sbjct 325302 AGTTGAAGTCACGGTCGTACACAATGGCAGAATCCA 325337 >seq4 Length=2525909 Score = 241 bits (266), Expect = 1e-58 Identities = 589/872 (68%), Gaps = 33/872 (4%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||| | ||| ||| | |||||| Sbjct 2286485 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAAATTGACCTG 2286544 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCA--AAGAATC-TGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||| | || | || || ||| | || || Sbjct 2286545 TCCAAGGACCTTCACGACTGGAACAACCGCCTGAACAAGGATGAACAGTACTTCATCTCG 2286604 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || || |||||||||||||| || || || |||||||| | ||||| | Sbjct 2286605 CACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAACCTCGTCGAGCGT 2286664 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || || || | | ||||| | ||||| ||||| || || | || Sbjct 2286665 TTCTCCGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATG 2286724 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACG 57864 || ||| | || || || | ||| ||||| || ||||| || ||| | ||||| | || Sbjct 2286725 GAGAACATCCACTCCGAGACGTACTCGCTGCTGATCGACACTTACATCAAGGAGCCCTCG 2286784 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCCAAGAAGGCA 57923 | | | | || || |||||||| ||||| || || |||| | ||| | ||||| Sbjct 2286785 CAGCGCACC-TAC-CTCTTCAACGCCATCGATACCAT-CCCGTGCATCCGCCGCAAGGCC 2286841 Query 57924 GAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATC 57980 || ||| | |||| ||||| | || || || | || || ||| || | || || Sbjct 2286842 GACTGGGCCCTCAAGTGGATCAC---CGACAAGGAGTCGACCTTTGCCCAGCGCCTGGTC 2286898 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATATTTTGGAT 58039 || || ||||||||||| || || ||||| |||||| ||||| || | || || ||| | Sbjct 2286899 GCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGC-GCTTTCGCCTCCATCTTCTGGCT 2286957 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 | || |||||||| ||||| |||||||| || ||||||| |||| ||||| ||||| Sbjct 2286958 GCGCAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGA 2287017 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCG 58159 ||| || || || || ||||| || || ||| ||| ||| |||| ||||| | | Sbjct 2287018 GGGCCTGCACACCGACTTTGCCTGTCTGCTGTTCTCGCAC---CTCAA-CAACCGCCCCA 2287073 Query 58160 GGATCGCA-----TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | | ||| || | | || |||||||| || |||| || || || ||||| | Sbjct 2287074 GCA-AGCAGCTAGTCGAGCAGATCATCACCGATGCTGTCGTCATTGAGAAGGAGTTCCTG 2287132 Query 58215 ACCGAAGCCCT-ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACAT 58273 ||||| ||||| || |||||| | ||||| |||||| || | ||| ||||||| Sbjct 2287133 ACCGAGGCCCTGCCCTGTGGCC-TCCTCGGCATGAACGCCGACCTCATGAAGCAGTACAT 2287191 Query 58274 TGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACG 58331 |||||| || |||||| | || | ||| || || || | ||| ||| | | Sbjct 2287192 TGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGAAACGAAAAGGTC--TACCGCGCC 2287249 Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaa 58391 | || || ||||| |||||| | |||||||||| |||||||| ||||| ||||| Sbjct 2287250 ACCAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAG 2287309 Query 58392 aaaaaaGTTAGCGAATATCAAAAATACGGCGT 58423 || || |||| || ||||| |||||| Sbjct 2287310 AAGCGCGTGGGCGACTACCAAAAGGCCGGCGT 2287341 >seq10 Length=988720 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||| ||| |||| ||||| | Sbjct 887339 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 887280 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 887279 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 887220 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || |||||||| || ||| |||| ||| Sbjct 887219 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGAC 887181 >seq3 Length=3916844 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| || || || ||||| |||| || || | ||| Sbjct 1905435 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCC 1905376 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 1905375 GACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1905316 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| | || || || | ||| || ||| Sbjct 1905315 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAAC 1905256 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || ||||| ||||| || || | ||| | || |||| Sbjct 1905255 ATTCAAAAGGAGTCCACTCTGCATCTCGTCCTCCGTCTGCGCGGTGGTA 1905207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766333135040