Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq4 244 2e-59
seq8 145 1e-29
seq2 93.3 6e-14
>seq4
Length=2525909
Score = 244 bits (270), Expect = 2e-59
Identities = 576/863 (67%), Gaps = 25/863 (3%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| |||| ||||| ||||| | ||| || | || |||
Sbjct 2286485 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAAATTGACCTG 2286544
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
||||||||||| |||| ||| | | || ||| | ||| | | || || |||
Sbjct 2286545 TCCAAGGACCTTCACGACTGGAACAACCGCCTGAACAAGGATGAACAGTACTTCATCTCG 2286604
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||||| | |||||||| |||| ||||| || ||||||||||| || || || || ||
Sbjct 2286605 CACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAACCTCGTCGAG-CG 2286663
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257
||||| ||| | || || |||| ||||| ||||| ||||| ||||||||
Sbjct 2286664 TTTCTCCGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 2286723
Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC--- 125314
|||||| | ||||| || | |||||| ||||| |||| ||||| || ||
Sbjct 2286724 GGAGAACATCCACTCCGAGACGTACTCGCTGCTGATCGACACTTACATCAAGGAGCCCTC 2286783
Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374
||| || | || ||||| ||||| ||||| || | |||| || || |||||
Sbjct 2286784 GCAGCGCACCTAC---CTCTTCAACGCCATCGATACCATCCCGTGCATCCGCCGCAAGGC 2286840
Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434
| |||| | ||||||| ||| | |||| | | ||| | | ||||| ||
Sbjct 2286841 CGACTGGGCCCTCAAGTGGATCACCGACAAGGAGTCGACCTTTGCCCAGCGCCTGGTCGC 2286900
Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494
|| |||||||| |||||||||||||| ||||| ||| || ||||||| |||||
Sbjct 2286901 CTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTTTCGCCTCCATCTTCTGGCTGCG 2286960
Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554
|||||||| |||||||| || ||||| | |||||| | || || || ||||||||
Sbjct 2286961 CAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGG 2287020
Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAG--TGCA 125610
||| ||| ||||||||| ||| ||||| ||||| || | | | ||| || |||
Sbjct 2287021 CCTGCACACCGACTTTGCCTGTCTGCTGTTCTCGCACCTCAACAACCGCCCCAGCAAGCA 2287080
Query 125611 GATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670
| | | || || ||||| |||||||| || || || | ||||
Sbjct 2287081 GCT----AGTCGAGCAGATCATC---------ACCGATGCTGTCGTCATTGAGAAGGAGT 2287127
Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGT 125730
| || ||||| |||| || || | | ||||||||| | | || ||| |||
Sbjct 2287128 TCCTGACCGAGGCCCTGCCCTGTGGCCTCCTCGGCATGAACGCCGACCTCATGAAGCAGT 2287187
Query 125731 ACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACG 125790
|||| ||||| || || || || || || || | | ||| | ||| ||
Sbjct 2287188 ACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGAAACGAAAAGGTCTACCGCG 2287247
Query 125791 CCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCG 125850
||| || |||||||| || ||| | ||| || || | || ||||||||||| ||||
Sbjct 2287248 CCACCAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCG 2287307
Query 125851 AGAAGAAGGTCAGCGAGTACAAA 125873
||||| || |||| ||| ||
Sbjct 2287308 AGAAGCGCGTGGGCGACTACCAA 2287330
>seq8
Length=1110981
Score = 145 bits (160), Expect = 1e-29
Identities = 303/447 (68%), Gaps = 6/447 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || ||||| || || | || | ||| ||||||| |||||||| |||
Sbjct 324867 CAGGGTGGCAACAAGCGGCCCGGTGCCTTTGCTATATACCTGGAACCCTGGCACGCCGAC 324808
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| ||||| || | || ||||||| ||| ||| ||||||| || ||| | |||
Sbjct 324807 GTGTTTGAGTTCCTTGACCTGCGCAAGAACCATGGAAAGGAAGAGGTTCGTGCCCGCGAC 324748
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAACGACGGTGGCT 97053
||||| || || ||| | || ||||||||||||| || | || | ||
Sbjct 324747 TTGTTCCTGGCTCTGTGGATCTGCGACCTGTTCATGAAGCGTGTTGAGAAGAACGAGG-- 324690
Query 97054 ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113
|||||| || ||||||||| || || ||||| ||| | || |||| ||||| ||||
Sbjct 324689 ACTGGACTCTGATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGATGAGT 324630
Query 97114 TTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCAC 97173
|||| || |||| ||||| | || ||||| | | || | || |
Sbjct 324629 TTGAAGCTCTGTACGAAAAGTACGAAAAGGAAGGCCGTGGCCGCATGGTTATCAAAGCTC 324570
Query 97174 GAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232
|||| |||||| | ||||| || ||| ||| |||||||| | ||| | || ||
Sbjct 324569 -AGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACTGGCAATCCCTTTATGCTT 324511
Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292
|||||||| | | || ||||| |||||||| || |||| ||||| |||||
Sbjct 324510 TACAAGGACAGCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCGCAGCTCC 324451
Query 97293 AATCTGTGCACGGAAATTGTAGAGTAC 97319
|| |||||||| || ||| | ||||||
Sbjct 324450 AACCTGTGCACTGAGATTATCGAGTAC 324424
>seq2
Length=3936381
Score = 93.3 bits (102), Expect = 6e-14
Identities = 158/224 (71%), Gaps = 4/224 (2%)
Strand=Plus/Minus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|| || ||||| || |||||||| ||||| ||| | || | ||| || |||| ||||||
Sbjct 850341 GGAGACCTGGGCCCCGTGTACGGCTTCCAATGGCGCCATTTTGGCGCCGAGTACGTAGAC 850282
Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTCT 70185
| | || ||||| |||| | ||||| || || | || || |||| ||| ||
Sbjct 850281 GCCAAAACGGACTACACGGGCAAAGGTGTCGACCAGCTAGCCGAGG-TCATCCACAAGCT 850223
Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245
|||||||||||| ||| || | || ||||| || | ||||| || ||||| | |
Sbjct 850222 CAAGACCAATCCGTACGATCGGCGCATTATAATGAGCGCGTGGAACCCCGCAGACCTAAA 850163
Query 70246 CCAAATGGCACTACCACCGTGTCA-CTGTTTGGCTCAGTTTTAC 70288
| ||||| || || |||||||| ||||| || ||||| |||
Sbjct 850162 GAAGATGGCCCTGCCGCCGTGTCATATGTTT-GCCCAGTTCTAC 850120
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
|||||| ||||||| | || | |||||||| | ||| ||||||| || || || |||
Sbjct 3151915 TTGCGGAAAAAGATCATGGCGCCACGAGGACCACGAAGACTCTTGTGAGTCGTGGTAGTC 3151856
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|||||||| | ||||| || ||||| || || | |||| || |||| ||||
Sbjct 3151855 ACAATGTCCGCAACGTCAAACGGACCAGGCATAACGCCAGCAGCAAGCATACCCGAAATG 3151796
Query 127222 TGTGCAATATCGGCCATCAG 127241
|| ||||| |||||||||||
Sbjct 3151795 TGCGCAATGTCGGCCATCAG 3151776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741059088841120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |