Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 244 2e-59 seq8 145 1e-29 seq2 93.3 6e-14 >seq4 Length=2525909 Score = 244 bits (270), Expect = 2e-59 Identities = 576/863 (67%), Gaps = 25/863 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| ||||| ||||| | ||| || | || ||| Sbjct 2286485 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAAATTGACCTG 2286544 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | || ||| | ||| | | || || ||| Sbjct 2286545 TCCAAGGACCTTCACGACTGGAACAACCGCCTGAACAAGGATGAACAGTACTTCATCTCG 2286604 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | |||||||| |||| ||||| || ||||||||||| || || || || || Sbjct 2286605 CACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAACCTCGTCGAG-CG 2286663 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||||| ||| | || || |||| ||||| ||||| ||||| |||||||| Sbjct 2286664 TTTCTCCGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 2286723 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC--- 125314 |||||| | ||||| || | |||||| ||||| |||| ||||| || || Sbjct 2286724 GGAGAACATCCACTCCGAGACGTACTCGCTGCTGATCGACACTTACATCAAGGAGCCCTC 2286783 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 ||| || | || ||||| ||||| ||||| || | |||| || || ||||| Sbjct 2286784 GCAGCGCACCTAC---CTCTTCAACGCCATCGATACCATCCCGTGCATCCGCCGCAAGGC 2286840 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | ||||||| ||| | |||| | | ||| | | ||||| || Sbjct 2286841 CGACTGGGCCCTCAAGTGGATCACCGACAAGGAGTCGACCTTTGCCCAGCGCCTGGTCGC 2286900 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 || |||||||| |||||||||||||| ||||| ||| || ||||||| ||||| Sbjct 2286901 CTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTTTCGCCTCCATCTTCTGGCTGCG 2286960 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||||| |||||||| || ||||| | |||||| | || || || |||||||| Sbjct 2286961 CAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGG 2287020 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAG--TGCA 125610 ||| ||| ||||||||| ||| ||||| ||||| || | | | ||| || ||| Sbjct 2287021 CCTGCACACCGACTTTGCCTGTCTGCTGTTCTCGCACCTCAACAACCGCCCCAGCAAGCA 2287080 Query 125611 GATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670 | | | || || ||||| |||||||| || || || | |||| Sbjct 2287081 GCT----AGTCGAGCAGATCATC---------ACCGATGCTGTCGTCATTGAGAAGGAGT 2287127 Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGT 125730 | || ||||| |||| || || | | ||||||||| | | || ||| ||| Sbjct 2287128 TCCTGACCGAGGCCCTGCCCTGTGGCCTCCTCGGCATGAACGCCGACCTCATGAAGCAGT 2287187 Query 125731 ACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACG 125790 |||| ||||| || || || || || || || | | ||| | ||| || Sbjct 2287188 ACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGAAACGAAAAGGTCTACCGCG 2287247 Query 125791 CCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCG 125850 ||| || |||||||| || ||| | ||| || || | || ||||||||||| |||| Sbjct 2287248 CCACCAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCG 2287307 Query 125851 AGAAGAAGGTCAGCGAGTACAAA 125873 ||||| || |||| ||| || Sbjct 2287308 AGAAGCGCGTGGGCGACTACCAA 2287330 >seq8 Length=1110981 Score = 145 bits (160), Expect = 1e-29 Identities = 303/447 (68%), Gaps = 6/447 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || ||||| || || | || | ||| ||||||| |||||||| ||| Sbjct 324867 CAGGGTGGCAACAAGCGGCCCGGTGCCTTTGCTATATACCTGGAACCCTGGCACGCCGAC 324808 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || ||||||| ||| ||| ||||||| || ||| | ||| Sbjct 324807 GTGTTTGAGTTCCTTGACCTGCGCAAGAACCATGGAAAGGAAGAGGTTCGTGCCCGCGAC 324748 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAACGACGGTGGCT 97053 ||||| || || ||| | || ||||||||||||| || | || | || Sbjct 324747 TTGTTCCTGGCTCTGTGGATCTGCGACCTGTTCATGAAGCGTGTTGAGAAGAACGAGG-- 324690 Query 97054 ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113 |||||| || ||||||||| || || ||||| ||| | || |||| ||||| |||| Sbjct 324689 ACTGGACTCTGATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGATGAGT 324630 Query 97114 TTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCAC 97173 |||| || |||| ||||| | || ||||| | | || | || | Sbjct 324629 TTGAAGCTCTGTACGAAAAGTACGAAAAGGAAGGCCGTGGCCGCATGGTTATCAAAGCTC 324570 Query 97174 GAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232 |||| |||||| | ||||| || ||| ||| |||||||| | ||| | || || Sbjct 324569 -AGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACTGGCAATCCCTTTATGCTT 324511 Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 |||||||| | | || ||||| |||||||| || |||| ||||| ||||| Sbjct 324510 TACAAGGACAGCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCGCAGCTCC 324451 Query 97293 AATCTGTGCACGGAAATTGTAGAGTAC 97319 || |||||||| || ||| | |||||| Sbjct 324450 AACCTGTGCACTGAGATTATCGAGTAC 324424 >seq2 Length=3936381 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || ||||| || |||||||| ||||| ||| | || | ||| || |||| |||||| Sbjct 850341 GGAGACCTGGGCCCCGTGTACGGCTTCCAATGGCGCCATTTTGGCGCCGAGTACGTAGAC 850282 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTCT 70185 | | || ||||| |||| | ||||| || || | || || |||| ||| || Sbjct 850281 GCCAAAACGGACTACACGGGCAAAGGTGTCGACCAGCTAGCCGAGG-TCATCCACAAGCT 850223 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 |||||||||||| ||| || | || ||||| || | ||||| || ||||| | | Sbjct 850222 CAAGACCAATCCGTACGATCGGCGCATTATAATGAGCGCGTGGAACCCCGCAGACCTAAA 850163 Query 70246 CCAAATGGCACTACCACCGTGTCA-CTGTTTGGCTCAGTTTTAC 70288 | ||||| || || |||||||| ||||| || ||||| ||| Sbjct 850162 GAAGATGGCCCTGCCGCCGTGTCATATGTTT-GCCCAGTTCTAC 850120 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| ||||||| | || | |||||||| | ||| ||||||| || || || ||| Sbjct 3151915 TTGCGGAAAAAGATCATGGCGCCACGAGGACCACGAAGACTCTTGTGAGTCGTGGTAGTC 3151856 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| | ||||| || ||||| || || | |||| || |||| |||| Sbjct 3151855 ACAATGTCCGCAACGTCAAACGGACCAGGCATAACGCCAGCAGCAAGCATACCCGAAATG 3151796 Query 127222 TGTGCAATATCGGCCATCAG 127241 || ||||| ||||||||||| Sbjct 3151795 TGCGCAATGTCGGCCATCAG 3151776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059088841120