Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq10 82.4 6e-11 >seq10 Length=988720 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 18852 CCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAA 18911 |||| || || ||||| || | || || | ||||||||||||| ||||| || | | Sbjct 887147 CCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGA 887206 Query 18912 TAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGC 18971 | || | |||||| ||| ||| | |||||| ||||| ||| || || || | | Sbjct 887207 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 887266 Query 18972 CGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACA 19030 ||| ||| || | ||| ||| |||| |||||| || ||||| || | || ||||| Sbjct 887267 CGATAGTGTC-CGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 887325 Query 19031 AAAATTTGCATTTT 19044 ||||| ||||| || Sbjct 887326 AAAATCTGCATCTT 887339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572739368728