Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq10 111 4e-19 seq3 100 7e-16 >seq10 Length=988720 Score = 111 bits (122), Expect = 4e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || |||||||| || || | ||||| || || || || ||||| || || Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| || || || || || || || || ||||||||||| | || ||||| || Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268 Query 104492 ACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | ||| || ||||| || ||||| |||||||| ||||| || || || || Sbjct 887269 ATAGTGTC-CGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAA 887327 Query 104551 TATCTGCATTTTG 104563 |||||||| ||| Sbjct 887328 AATCTGCATCTTG 887340 >seq3 Length=3916844 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || |||||||| || || ||||| || || || | || || Sbjct 1905452 AGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCC 1905511 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||||||||| || || | ||| || || ||||| || || || || ||| Sbjct 1905512 TCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 1905571 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || ||||| || | || ||| || ||| ||||| || || || ||| Sbjct 1905572 TGGATCTTGGACTTGACATTGTCGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTC 1905631 Query 104528 TTACCAGT 104535 || || || Sbjct 1905632 TTGCCGGT 1905639 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || || ||||| || ||||| || || || | || || Sbjct 1905224 AGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATCC 1905283 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||||||||| || || | ||| || || || || || || || || ||| Sbjct 1905284 TCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 1905343 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || || || || | || ||| || || || || || || || ||| Sbjct 1905344 TGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATGGTC 1905403 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || || ||||| Sbjct 1905404 TTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398222972496