Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq6 194 3e-45
seq2 109 9e-20
>seq6
Length=1530755
Score = 194 bits (214), Expect = 3e-45
Identities = 206/269 (77%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||||||| |||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 1325216 CGCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCTGCTA 1325274
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||||||||| || ||||||||||| ||||||||| | || | || |||| |||||||
Sbjct 1325275 TCCGTCGTCTCGCGCGTCGTGGTGGTGTCAAGCGTATTTCGGCCATGATCTACGAAGAGA 1325334
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|||| |||| ||||| |||||| | || |||| |||||| || ||| || |
Sbjct 1325335 CCCGTGGTGTTCTGAAGTCCTTCCTTGAAGGTGTCATCCGTGATGCCGTCACCTACACTG 1325394
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||||||||||||| |||| ||||||| || | || | ||||
Sbjct 1325395 AGCACGCCAAGCGCAAGACTGTCACCTCCCTGGACGTCGTCTACGCCCTCAAGAGACAAG 1325454
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| || | | || ||||| || |||||
Sbjct 1325455 GACGCACTCTGTACGGTTTCGGTGGTTAA 1325483
>seq2
Length=3936381
Score = 109 bits (120), Expect = 9e-20
Identities = 87/102 (85%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| || |
Sbjct 807381 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCCA 807439
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 807440 TCCGTCGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 807481
Score = 80.6 bits (88), Expect = 4e-11
Identities = 116/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| ||||| |||| | ||| |||||| || ||||| | || |
Sbjct 807543 TGATCTACGAGGAGACTCGTGGTGTTCTCAAGTCCTTCCTTGAGGGTGTTATTCGCGACG 807602
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
|| || ||| || ||||| || || || |||||||||||||| | || | ||||| |
Sbjct 807603 CTGTCACCTACACGGAGCATGCCAAGCGCAAGACTGTCACCTCGCTCGACGTTGTCTACG 807662
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || ||||||| | || ||||| || |||||
Sbjct 807663 CCCTTAAGCGCCAGGGCCGTACCCTGTACGGTTTCGGTGGTTAA 807706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075189028316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |