Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 194 3e-45 seq2 109 9e-20 >seq6 Length=1530755 Score = 194 bits (214), Expect = 3e-45 Identities = 206/269 (77%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| |||| |||||| || ||||| || || ||||||||||| |||| Sbjct 1325216 CGCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCTGCTA 1325274 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || ||||||||||| ||||||||| | || | || |||| ||||||| Sbjct 1325275 TCCGTCGTCTCGCGCGTCGTGGTGGTGTCAAGCGTATTTCGGCCATGATCTACGAAGAGA 1325334 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| |||| ||||| |||||| | || |||| |||||| || ||| || | Sbjct 1325335 CCCGTGGTGTTCTGAAGTCCTTCCTTGAAGGTGTCATCCGTGATGCCGTCACCTACACTG 1325394 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||||||| |||| ||||||| || | || | |||| Sbjct 1325395 AGCACGCCAAGCGCAAGACTGTCACCTCCCTGGACGTCGTCTACGCCCTCAAGAGACAAG 1325454 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | || | | || ||||| || ||||| Sbjct 1325455 GACGCACTCTGTACGGTTTCGGTGGTTAA 1325483 >seq2 Length=3936381 Score = 109 bits (120), Expect = 9e-20 Identities = 87/102 (85%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| || | Sbjct 807381 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCCA 807439 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| |||||||||||||| ||||||||| | |||| Sbjct 807440 TCCGTCGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 807481 Score = 80.6 bits (88), Expect = 4e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| ||||| |||| | ||| |||||| || ||||| | || | Sbjct 807543 TGATCTACGAGGAGACTCGTGGTGTTCTCAAGTCCTTCCTTGAGGGTGTTATTCGCGACG 807602 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || ||| || ||||| || || || |||||||||||||| | || | ||||| | Sbjct 807603 CTGTCACCTACACGGAGCATGCCAAGCGCAAGACTGTCACCTCGCTCGACGTTGTCTACG 807662 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||||| | || ||||| || ||||| Sbjct 807663 CCCTTAAGCGCCAGGGCCGTACCCTGTACGGTTTCGGTGGTTAA 807706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075189028316