Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2 114 9e-21 seq3 89.7 3e-13 >seq2 Length=3936381 Score = 114 bits (126), Expect = 9e-21 Identities = 200/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGGTAAGGGAAACGGT 6257 ||||||||| ||||| ||||| || ||||| ||||| ||||||| ||||| |||||| Sbjct 1499046 GTTCTACCGGTACAAGATGCCCCG--TCTGCAAACCAAGATCGAGGGCAAGGGTAACGGT 1499103 Query 6258 ATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACC 6317 || || || || | |||||| || ||| ||||| || | || | ||||||| || Sbjct 1499104 ATCAAGACTGTTGTCGTCAACCTGTCTGCCGTCGCCCAGTCTCTTGCCCGCCCTGGTGCC 1499163 Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377 ||| || || || || || | || || || || ||||| | |||| | | | Sbjct 1499164 CACCTGATCAAGTACTTTGGCTTTGAGCTCGGTGCCCAGACCAACATTGACCCCCCGGAT 1499223 Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437 || |||| ||| | ||||| || ||| || | |||||||||||| | | || Sbjct 1499224 GACCGCTGGATCATCAACGGCTCCCATGACACCAAGAAGCTGCAGGACCACGTCTATGGT 1499283 Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 || ||| ||||||||| ||||| | | ||| | ||||| ||||||| Sbjct 1499284 TTCATTGTCAAGTTTGTTCTGTGCAAGAAGTGCAAGAACCCTGAGACCG 1499332 >seq3 Length=3916844 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | || | ||| |||||| |||||||||||| ||||| || | Sbjct 1905207 TACCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGG 1905266 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | || ||||| ||||| || ||||| || || || | || Sbjct 1905267 AAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGG 1905326 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| || || ||| || || | || || || | || | Sbjct 1905327 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGA 1905386 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || |||| ||| || ||||| || ||||| Sbjct 1905387 CTTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947151013972