Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 9e-21
seq3 89.7 3e-13
>seq2
Length=3936381
Score = 114 bits (126), Expect = 9e-21
Identities = 200/289 (69%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGGTAAGGGAAACGGT 6257
||||||||| ||||| ||||| || ||||| ||||| ||||||| ||||| ||||||
Sbjct 1499046 GTTCTACCGGTACAAGATGCCCCG--TCTGCAAACCAAGATCGAGGGCAAGGGTAACGGT 1499103
Query 6258 ATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACC 6317
|| || || || | |||||| || ||| ||||| || | || | ||||||| ||
Sbjct 1499104 ATCAAGACTGTTGTCGTCAACCTGTCTGCCGTCGCCCAGTCTCTTGCCCGCCCTGGTGCC 1499163
Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377
||| || || || || || | || || || || ||||| | |||| | | |
Sbjct 1499164 CACCTGATCAAGTACTTTGGCTTTGAGCTCGGTGCCCAGACCAACATTGACCCCCCGGAT 1499223
Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437
|| |||| ||| | ||||| || ||| || | |||||||||||| | | ||
Sbjct 1499224 GACCGCTGGATCATCAACGGCTCCCATGACACCAAGAAGCTGCAGGACCACGTCTATGGT 1499283
Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486
|| ||| ||||||||| ||||| | | ||| | ||||| |||||||
Sbjct 1499284 TTCATTGTCAAGTTTGTTCTGTGCAAGAAGTGCAAGAACCCTGAGACCG 1499332
>seq3
Length=3916844
Score = 89.7 bits (98), Expect = 3e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || ||| | || | ||| |||||| |||||||||||| ||||| || |
Sbjct 1905207 TACCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGG 1905266
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | ||| | || || | || ||||| ||||| || ||||| || || || | ||
Sbjct 1905267 AAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGG 1905326
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||| || |||||| || || ||| || || | || || || | || |
Sbjct 1905327 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGA 1905386
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| | || || || || || |||| ||| || ||||| || |||||
Sbjct 1905387 CTTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947151013972
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |