Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 145 8e-30 >seq4 Length=2525909 Score = 145 bits (160), Expect = 8e-30 Identities = 369/558 (66%), Gaps = 5/558 (1%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||||| || | || ||||| || || |||| ||| ||| ||| || | Sbjct 2287041 CAGGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 2286982 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || || ||||| || || || || ||| || || || || Sbjct 2286981 CCAGGCATGAGGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAG 2286922 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 || || || ||||| ||||| || || | || | |||||| | | || | || Sbjct 2286921 ATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGGTCGACTCCTTGTCGGTG 2286862 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 ||||| || | ||||| ||||| || || || || | || ||||| ||||| Sbjct 2286861 ATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTG 2286802 Query 93332 AATAGGTAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || ||||| |||| || | || | ||||| || ||||| | ||| || ||| | Sbjct 2286801 AAGAGGTAGGTGCGCTGCGAGGGCTCCTTG-ATGTAAGTGTCGATCAGCAGCGAGTACGT 2286743 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 || || |||| |||||||| || ||||| |||||||| || | || || | ||| Sbjct 2286742 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGAT 2286683 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 ||| || || || || | ||| ||||| || || ||||| || || |||||||| || Sbjct 2286682 CTGGACCTCGCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCGGC 2286623 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCA 93567 || || || | || ||| || || | | ||||| | || | | || | ||| Sbjct 2286622 GAAGAAGGCGAGGATGTGCGAGATGAAGTACTGTTCATCCTTGTTCAGGCGGTTGTTCCA 2286563 Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 ||| || || || || || || | ||| ||| ||||||| || || || || || || Sbjct 2286562 GTCGTGAAGGTCCTTGGACAGGTCAATTTCCTCGGCAGTCCAGAAGGACGCCTCGGCCTT 2286503 Query 93628 TTTGTACATATCCCATAT 93645 |||||||| | ||| || Sbjct 2286502 CTTGTACATCTGCCAGAT 2286485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860716470880