Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq4 145 8e-30
>seq4
Length=2525909
Score = 145 bits (160), Expect = 8e-30
Identities = 369/558 (66%), Gaps = 5/558 (1%)
Strand=Plus/Minus
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|| ||||||||||| || | || ||||| || || |||| ||| ||| ||| || |
Sbjct 2287041 CAGGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 2286982
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
|| || | || || || || ||||| || || || || ||| || || || ||
Sbjct 2286981 CCAGGCATGAGGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAG 2286922
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271
|| || || ||||| ||||| || || | || | |||||| | | || | ||
Sbjct 2286921 ATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGGTCGACTCCTTGTCGGTG 2286862
Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331
||||| || | ||||| ||||| || || || || | || ||||| |||||
Sbjct 2286861 ATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTG 2286802
Query 93332 AATAGGTAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390
|| ||||| |||| || | || | ||||| || ||||| | ||| || ||| |
Sbjct 2286801 AAGAGGTAGGTGCGCTGCGAGGGCTCCTTG-ATGTAAGTGTCGATCAGCAGCGAGTACGT 2286743
Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450
|| || |||| |||||||| || ||||| |||||||| || | || || | |||
Sbjct 2286742 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGAT 2286683
Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510
||| || || || || | ||| ||||| || || ||||| || || |||||||| ||
Sbjct 2286682 CTGGACCTCGCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCGGC 2286623
Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCA 93567
|| || || | || ||| || || | | ||||| | || | | || | |||
Sbjct 2286622 GAAGAAGGCGAGGATGTGCGAGATGAAGTACTGTTCATCCTTGTTCAGGCGGTTGTTCCA 2286563
Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627
||| || || || || || || | ||| ||| ||||||| || || || || || ||
Sbjct 2286562 GTCGTGAAGGTCCTTGGACAGGTCAATTTCCTCGGCAGTCCAGAAGGACGCCTCGGCCTT 2286503
Query 93628 TTTGTACATATCCCATAT 93645
|||||||| | ||| ||
Sbjct 2286502 CTTGTACATCTGCCAGAT 2286485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860716470880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |