Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq8 102 7e-17 seq10 98.7 8e-16 >seq3 Length=3916844 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || ||||||| ||||| || | || Sbjct 1905435 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCC 1905376 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| || || || || || Sbjct 1905375 GACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1905316 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | |||||| ||| ||| | ||||| |||||| Sbjct 1905315 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAAC 1905256 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || ||||| | ||| | || | || ||||||| ||| Sbjct 1905255 ATTCAAAAGGAGTCCACTCTGCATCTCGTCCTCCGTCTGCGCGGTGGT 1905208 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22258 ACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAG 22317 ||||| ||||| || || | |||||| | ||| | |||| || || ||||||||| Sbjct 1905111 ACTCTCGAAGTCGAGTCCTCTGATACCATTGACAACGTCAAGTCCAAGATCCAAGACAAG 1905052 Query 22318 GAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377 ||||| || || || || || || ||||| || || || ||||| ||| | |||||| Sbjct 1905051 GAGGGCATCCCCCCGGACCAGCAGCGTCTCATTTTCGCTGGCAAGCAGCTTGAGGATGGT 1904992 Query 22378 CGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTG 22437 ||||| |||| || |||||||| || || ||||| || | ||| | ||| |||| || Sbjct 1904991 CGCACTCTCTCAGACTACAACATCCAGAAGGAATCTACTCTGCATCTGGTTCTGCGTCTG 1904932 Query 22438 CGCGGAGG 22445 || ||||| Sbjct 1904931 CGTGGAGG 1904924 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| |||||||| |||| || | ||| || |||| Sbjct 1905639 ACCGGCAAGACCATCACCCTTGAGGTGGAAACTTCCGACACGATCGACAATGTCAAGTCC 1905580 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || || || || || || || ||||| || || Sbjct 1905579 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTGATCTTTGCTGGAAAG 1905520 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||| ||| | ||||| |||||||| || ||||| ||||| Sbjct 1905519 CAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATCCAGAAAGAGTCCAC 1905467 >seq8 Length=1110981 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || || || ||||| ||||| Sbjct 479025 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTTGCTGGCAAG 478966 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||||| | ||||| |||||||| || || || |||||| | || Sbjct 478965 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 478906 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| |||| |||| || ||| Sbjct 478905 CTGGTTCTGCGTCTGCGTGGTGGT 478882 Score = 98.7 bits (108), Expect = 8e-16 Identities = 208/307 (68%), Gaps = 5/307 (2%) Strand=Plus/Plus Query 130101 CAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC 130160 ||| |||||||| || | | |||||||||||| ||||| | || || || | || || Sbjct 324787 CAGGTCAAGGAACTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACC 324846 Query 130161 CTTCCG---TTTGCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217 ||| ||||| || |||||||| | ||| | | |||||| |||| |||||||| Sbjct 324847 GGGCCGCTTGTTGCCACCCTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACAT 324906 Query 130218 TGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAAC 130277 | | | ||||||| || ||||| |||| ||||| | |||| || |||| Sbjct 324907 AGGAACAATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAAT 324966 Query 130278 GTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAA-TCGCGTA 130336 | || ||| | ||||| |||||||| | | || || |||| || ||| || | | Sbjct 324967 GCGGTGGACGTTGAGACCGATGCCGCCAGCCATCTTGGAGATCATAGCACAAGTCTTG-A 325025 Query 130337 GCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAGGCCA 130396 | || || |||||||| | || ||||| || || |||| | || || || || | || Sbjct 325026 GGGTATCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACA 325085 Query 130397 ATTGGGC 130403 ||||| Sbjct 325086 GCTGGGC 325092 >seq10 Length=988720 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| ||||| || || || | || ||||| ||| | || || || || || Sbjct 887342 GTCAAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAG 887283 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | || || | ||| || |||| || ||||| ||||||||||| ||||| || Sbjct 887282 TCCTCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCG 887223 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || || || || || || || || ||| | ||||| ||||||| | || || Sbjct 887222 GACCAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACCCTGTCTGAC 887163 Query 22393 TACAACATTCAAAA 22406 |||||||| || || Sbjct 887162 TACAACATCCAGAA 887149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727938614780