Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq3 114 1e-20
seq8 102 7e-17
seq10 98.7 8e-16
>seq3
Length=3916844
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | || || || || ||||||| ||||| || | ||
Sbjct 1905435 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCC 1905376
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || || || ||||||||||| || || || || ||
Sbjct 1905375 GACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1905316
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| || || ||| | |||||| ||| ||| | ||||| ||||||
Sbjct 1905315 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAAC 1905256
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||||| || ||||| | ||| | || | || ||||||| |||
Sbjct 1905255 ATTCAAAAGGAGTCCACTCTGCATCTCGTCCTCCGTCTGCGCGGTGGT 1905208
Score = 109 bits (120), Expect = 5e-19
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 22258 ACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAG 22317
||||| ||||| || || | |||||| | ||| | |||| || || |||||||||
Sbjct 1905111 ACTCTCGAAGTCGAGTCCTCTGATACCATTGACAACGTCAAGTCCAAGATCCAAGACAAG 1905052
Query 22318 GAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377
||||| || || || || || || ||||| || || || ||||| ||| | ||||||
Sbjct 1905051 GAGGGCATCCCCCCGGACCAGCAGCGTCTCATTTTCGCTGGCAAGCAGCTTGAGGATGGT 1904992
Query 22378 CGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTG 22437
||||| |||| || |||||||| || || ||||| || | ||| | ||| |||| ||
Sbjct 1904991 CGCACTCTCTCAGACTACAACATCCAGAAGGAATCTACTCTGCATCTGGTTCTGCGTCTG 1904932
Query 22438 CGCGGAGG 22445
|| |||||
Sbjct 1904931 CGTGGAGG 1904924
Score = 109 bits (120), Expect = 5e-19
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| ||||| |||||||| |||| || | ||| || ||||
Sbjct 1905639 ACCGGCAAGACCATCACCCTTGAGGTGGAAACTTCCGACACGATCGACAATGTCAAGTCC 1905580
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || || || || || || || || || ||||| || ||
Sbjct 1905579 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTGATCTTTGCTGGAAAG 1905520
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||| | |||||| ||| ||| | ||||| |||||||| || ||||| |||||
Sbjct 1905519 CAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATCCAGAAAGAGTCCAC 1905467
>seq8
Length=1110981
Score = 102 bits (112), Expect = 7e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || || || || || || || ||||| |||||
Sbjct 479025 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTTGCTGGCAAG 478966
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | |||||| ||||||| | ||||| |||||||| || || || |||||| | ||
Sbjct 478965 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 478906
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| ||| |||| |||| || |||
Sbjct 478905 CTGGTTCTGCGTCTGCGTGGTGGT 478882
Score = 98.7 bits (108), Expect = 8e-16
Identities = 208/307 (68%), Gaps = 5/307 (2%)
Strand=Plus/Plus
Query 130101 CAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC 130160
||| |||||||| || | | |||||||||||| ||||| | || || || | || ||
Sbjct 324787 CAGGTCAAGGAACTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACC 324846
Query 130161 CTTCCG---TTTGCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217
||| ||||| || |||||||| | ||| | | |||||| |||| ||||||||
Sbjct 324847 GGGCCGCTTGTTGCCACCCTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACAT 324906
Query 130218 TGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAAC 130277
| | | ||||||| || ||||| |||| ||||| | |||| || ||||
Sbjct 324907 AGGAACAATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAAT 324966
Query 130278 GTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAA-TCGCGTA 130336
| || ||| | ||||| |||||||| | | || || |||| || ||| || | |
Sbjct 324967 GCGGTGGACGTTGAGACCGATGCCGCCAGCCATCTTGGAGATCATAGCACAAGTCTTG-A 325025
Query 130337 GCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAGGCCA 130396
| || || |||||||| | || ||||| || || |||| | || || || || | ||
Sbjct 325026 GGGTATCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACA 325085
Query 130397 ATTGGGC 130403
|||||
Sbjct 325086 GCTGGGC 325092
>seq10
Length=988720
Score = 98.7 bits (108), Expect = 8e-16
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
|| |||||||| ||||| || || || | || ||||| ||| | || || || || ||
Sbjct 887342 GTCAAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAG 887283
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
|| | || || | ||| || |||| || ||||| ||||||||||| ||||| ||
Sbjct 887282 TCCTCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCG 887223
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
|| || || || || || || || || || ||| | ||||| ||||||| | || ||
Sbjct 887222 GACCAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACCCTGTCTGAC 887163
Query 22393 TACAACATTCAAAA 22406
|||||||| || ||
Sbjct 887162 TACAACATCCAGAA 887149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727938614780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |