Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 111 3e-19 seq9 96.9 7e-15 >seq6 Length=1530755 Score = 111 bits (122), Expect = 3e-19 Identities = 145/199 (73%), Gaps = 10/199 (5%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| |||||| || ||||| ||||| |||||||| || || ||||| |||||| Sbjct 1261941 TCCCGTATTGCTGTCATCGGTCCCAACGGTGCCGGTAAGTCGACTCTGATCAACGTCCTG 1262000 Query 280221 ACTGGCGAG-----ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGA 280275 ||||| ||| |||| |||||| | | ||| |||| ||||| || | Sbjct 1262001 ACTGGTGAGCTGGTTCCCA--CCACTGGTGAG---ATTTACCAGCACGAGAACATCCGTA 1262055 Query 280276 TGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTA 280335 | || ||| | |||||||||||| |||||| || |||||||||||| ||||||| Sbjct 1262056 TCGCCTACATTAAGCAGCACGCTTTCGCCCACATTGATCACCACCTGGACAAGACTCCTT 1262115 Query 280336 ACCAATACATTCAGTGGCG 280354 | |||||||||||||| Sbjct 1262116 CGGAGTACATTCAGTGGCG 1262134 Score = 109 bits (120), Expect = 1e-18 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| |||| |||||| || || || |||| ||||||||||| ||| Sbjct 1261125 GGTGAGGACCTGTGCAACTGCACTTTCTCCCTTGCCTACGGTGCCAAGATTCTGCTTAAC 1261184 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | | |||||||| | || || ||||| ||||||||| || | Sbjct 1261185 CAGACCCACCTGCGCCTGAAGCGTGGTCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 1261244 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | || || || ||||| ||| Sbjct 1261245 GGCAAGTCTACTCTGATGCGTGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 1261303 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 1261304 GTCCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTGGACTC 1261345 >seq9 Length=1092945 Score = 96.9 bits (106), Expect = 7e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751 ||| || || || || || ||||||||||||||||| |||||||| |||| ||||| | Sbjct 1072838 GCCTGTTGGATCGCTCTCTGGTGGTTGGAAGATGAAACTGGCCCTGGCTCGTGCCATGTT 1072897 Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | ||||| || || || || || || || || ||||| |||| ||||||| Sbjct 1072898 GCAAAAGGCCGACGTTCTGCTCCTGGACGAACCTACTAACCATTTGGATGTGGCCAACGT 1072957 Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCT 279869 ||||| | |||||| |||| | | | || |||| |||||||| ||| Sbjct 1072958 CAAGTGGCTGGAAAACTACCT--CCAGACCCACCCCGACATTACTTCTCTCATTGTTTCT 1073015 Query 279870 CACGACTCTGGCTTCCTAGATGCCGT 279895 ||||||||||||||||| ||||| || Sbjct 1073016 CACGACTCTGGCTTCCTGGATGCTGT 1073041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836641970092