Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq6 111 3e-19
seq9 96.9 7e-15
>seq6
Length=1530755
Score = 111 bits (122), Expect = 3e-19
Identities = 145/199 (73%), Gaps = 10/199 (5%)
Strand=Plus/Plus
Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220
|| || |||| |||||| || ||||| ||||| |||||||| || || ||||| ||||||
Sbjct 1261941 TCCCGTATTGCTGTCATCGGTCCCAACGGTGCCGGTAAGTCGACTCTGATCAACGTCCTG 1262000
Query 280221 ACTGGCGAG-----ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGA 280275
||||| ||| |||| |||||| | | ||| |||| ||||| || |
Sbjct 1262001 ACTGGTGAGCTGGTTCCCA--CCACTGGTGAG---ATTTACCAGCACGAGAACATCCGTA 1262055
Query 280276 TGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTA 280335
| || ||| | |||||||||||| |||||| || |||||||||||| |||||||
Sbjct 1262056 TCGCCTACATTAAGCAGCACGCTTTCGCCCACATTGATCACCACCTGGACAAGACTCCTT 1262115
Query 280336 ACCAATACATTCAGTGGCG 280354
| ||||||||||||||
Sbjct 1262116 CGGAGTACATTCAGTGGCG 1262134
Score = 109 bits (120), Expect = 1e-18
Identities = 159/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| ||||| |||| |||||| || || || |||| ||||||||||| |||
Sbjct 1261125 GGTGAGGACCTGTGCAACTGCACTTTCTCCCTTGCCTACGGTGCCAAGATTCTGCTTAAC 1261184
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| ||| | | |||||||| | || || ||||| ||||||||| || |
Sbjct 1261185 CAGACCCACCTGCGCCTGAAGCGTGGTCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 1261244
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||||| ||||| ||||| |||| ||| | || || || ||||| |||
Sbjct 1261245 GGCAAGTCTACTCTGATGCGTGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 1261303
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 1261304 GTCCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTGGACTC 1261345
>seq9
Length=1092945
Score = 96.9 bits (106), Expect = 7e-15
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751
||| || || || || || ||||||||||||||||| |||||||| |||| ||||| |
Sbjct 1072838 GCCTGTTGGATCGCTCTCTGGTGGTTGGAAGATGAAACTGGCCCTGGCTCGTGCCATGTT 1072897
Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811
| ||||| || || || || || || || || ||||| |||| |||||||
Sbjct 1072898 GCAAAAGGCCGACGTTCTGCTCCTGGACGAACCTACTAACCATTTGGATGTGGCCAACGT 1072957
Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCT 279869
||||| | |||||| |||| | | | || |||| |||||||| |||
Sbjct 1072958 CAAGTGGCTGGAAAACTACCT--CCAGACCCACCCCGACATTACTTCTCTCATTGTTTCT 1073015
Query 279870 CACGACTCTGGCTTCCTAGATGCCGT 279895
||||||||||||||||| ||||| ||
Sbjct 1073016 CACGACTCTGGCTTCCTGGATGCTGT 1073041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836641970092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |