Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq4 188 1e-42
seq8 154 3e-32
seq3 152 9e-32
seq6 145 1e-29
seq10 132 9e-26
>seq4
Length=2525909
Score = 188 bits (208), Expect = 1e-42
Identities = 566/866 (65%), Gaps = 31/866 (4%)
Strand=Plus/Minus
Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997
|||||| ||||| ||||| || || || |||||||||||||| |||||| ||||
Sbjct 2287342 GACGCCGGCCTTTTGGTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAG 2287283
Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAG 10057
|| ||| |||||| |||||||||||||| ||||| | ||| || |||||
Sbjct 2287282 CGAGATGTTCTCCATAAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTTCCGAG 2287223
Query 10058 TGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCAT 10117
|| || | |||||| || |||||||| |||||||| |||| ||||| | ||||||
Sbjct 2287222 GGCGACGAGCAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCAT 2287163
Query 10118 GCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTC 10177
||| | | || ||||| | ||| ||| | ||| ||||| || || |||| || ||
Sbjct 2287162 GCCGAGGAGGCCACAGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGCATC 2287103
Query 10178 CTCGACGA--TGCTC--TTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACA 10233
|| || ||||| | | | | ||| | | ||||| ||| | ||| |||
Sbjct 2287102 GGTGATGATCTGCTCGACTAGCTGCTTGCTGGGGC-GGTTGTT---GAGGTGCGAGAACA 2287047
Query 10234 GGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293
| || |||| | ||| ||||||||||| || ||| | ||||||||| ||
Sbjct 2287046 GCAGACAGGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGG 2286987
Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGA 10353
||| || |||||||| || || |||||||||||||| |||| | ||| | || ||||
Sbjct 2286986 TCAGGCCAGGCATGAGGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGA 2286927
Query 10354 ACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCG------ 10405
|||||| ||||| ||| | ||||||| ||||||| || |||| ||
Sbjct 2286926 --AGAAGATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGG-TCGACTCCT 2286870
Query 10406 -GTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCT 10464
|||| | | | || |||||| | ||||| | | | ||||| || |
Sbjct 2286869 TGTCG---GTGATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCACGGGATGGTAT 2286813
Query 10465 CGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCA 10524
|||| || | |||||| | | | |||| | |||| || || || | ||||
Sbjct 2286812 CGATGGCGTTGAAGAGGTAGGTGCGCTGCGAGGGCTCCTTGATGTAAGTGTCGATCAGCA 2286753
Query 10525 GGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTG 10584
| ||||| |||| ||||| | |||| | |||| | ||||||| || |
Sbjct 2286752 GCGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGG 2286693
Query 10585 CCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCAT 10644
|| |||| | ||| || ||| || | | |||||||| | || ||||| |
Sbjct 2286692 CCTCGGGGATCTGGACCTCGCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGT 2286633
Query 10645 CGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA--- 10701
|| | || |||||| ||||||||||| |||||||| | ||||| | |||||
Sbjct 2286632 CGGATGCGGCGAAGAAGGCGAGGATGTGCGAGATGAAGTACTGTTCATCCTTGTTCAGGC 2286573
Query 10702 -GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAA 10760
||| || |||||| | |||| | || | | ||||| | ||||||||
Sbjct 2286572 GGTTGTT----CCAGTCGTGAAGGTCCTTGGACAGGTCAATTTCCTCGGCAGTCCAGAAG 2286517
Query 10761 GTGGCAACGGCCTTCTTGTACATCTG 10786
| || |||||||||||||||||||
Sbjct 2286516 GACGCCTCGGCCTTCTTGTACATCTG 2286491
>seq8
Length=1110981
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||| ||| || |||||||| || |||||||| || |||||
Sbjct 478883 CCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 478942
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || || | || ||||| || |||
Sbjct 478943 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 479002
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || ||
Sbjct 479003 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 479062
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| | ||| ||||| || ||||| ||||||||||||||
Sbjct 479063 TCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 479100
Score = 98.7 bits (108), Expect = 2e-15
Identities = 182/267 (68%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 30920 CTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGA 30979
||| | |||||||| ||| | ||||||||| || || | | || || || | ||
Sbjct 323608 CTGGGACTGGTCAATAAAGGCACCGCGGTCGGCAGCCATCTGAACAACCGTACGCTGCGA 323667
Query 30980 CAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTG 31039
| ||||| | |||||||| | ||||||| || | | | |||| ||| | |||
Sbjct 323668 AATTTCCCACACCGTCTTGTATAGCGCCTTGATATCCGTGGGAATGCTGCTGATATTTTG 323727
Query 31040 GATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGC 31099
|||||| || || |||||| ||| ||||||||||| || |||||| |||| | |
Sbjct 323728 GATGGAGCCGTTGTCGGCAATGATCCGGTTCTTCATGTTATCAGACCACAGGCCAAGGTC 323787
Query 31100 GATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCG 31159
|| |||||||||| || | |||||| || ||||||| || ||||| |||||
Sbjct 323788 GACAAGGTCGCGCAGCAGCCAAGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCG 323847
Query 31160 GCTGTACAGATTAGAAGTGATCGGCTC 31186
||| | || |||||| |||||
Sbjct 323848 CTGGTAAATGTTGGAAGTGTAGGGCTC 323874
>seq3
Length=3916844
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | || | || || |||||||| ||||| ||||| || |||||
Sbjct 1905209 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 1905268
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || || | || ||||| || ||
Sbjct 1905269 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 1905328
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || |||
Sbjct 1905329 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGACT 1905388
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| ||||| || |||||||||||||| || |||||
Sbjct 1905389 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435
Score = 149 bits (164), Expect = 1e-30
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || |||| |||| || || || || || || |||||||| || || |||
Sbjct 1904924 CCTCCACGCAGACGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAG 1904983
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| ||||| | || ||||| || ||
Sbjct 1904984 AGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1905043
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| ||||| | ||||||| || ||||| || | || || |||
Sbjct 1905044 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTATCAGAGGACTCGACT 1905103
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | || ||||| ||||| || |||||||||||||
Sbjct 1905104 TCGAGAGTTATGGTCTTTCCAGTCAGGGTCTTGACGA 1905140
Score = 116 bits (128), Expect = 7e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || ||||||||||| |||||||| || ||||| || || | ||||| || | ||||
Sbjct 1905461 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGC 1905520
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || || | || ||||| || || ||||| |||||||| || |||||
Sbjct 1905521 TTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTG 1905580
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
| |||||| ||||| ||||| | | ||| || || | ||||||||| || || ||
Sbjct 1905581 GACTTGACATTGTCGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTCTTGCCGGT 1905639
>seq6
Length=1530755
Score = 145 bits (160), Expect = 1e-29
Identities = 486/745 (65%), Gaps = 31/745 (4%)
Strand=Plus/Minus
Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326
|||||| | | |||||| ||||| |||||||| ||||| ||| || | | |
Sbjct 1261845 CCTTGGTCTTCACACCCTCAAGGAAACCGGGCTCAGGGAAGGTGAACTCCATCTCGGAGG 1261786
Query 225327 CCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTC 225386
| ||| ||||||||||| ||| || | ||| ||||| ||| |||||| |
Sbjct 1261785 CACCCAGCTCGTAGTAAGACTTGGCCGAAGGGCACTTCTTGACGAACTCAGCCAGGTTAC 1261726
Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCG 225445
| ||| | | ||||||| || |||| || ||||| ||| | |||||| |
Sbjct 1261725 CACGGTAACGCTTAAGCTTGAAACGCT---CGTAGTGGACAATGTGCTG-GCACACGTTG 1261670
Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAG 225504
|| |||||||||||||||||||||||||||||||| | || | | || | | ||
Sbjct 1261669 TCGAGGAAGCCAGAGTCGTGGGACACAATGATGGAAGTGCAGG---GAGAGTTGCAT-AG 1261614
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| ||||| ||||| | || |||| ||||| ||||| |||||||||||
Sbjct 1261613 GTAATCCTCCAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCCAGAAG 1261554
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
||| || || | | | || || ||| || || | ||||||||| ||||| || ||
Sbjct 1261553 CAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGGGCCAGCTTCATCTTCCAACCACC 1261494
Query 225625 GGACAGGGAGCCGATTGAAACAGAGTGCTTAGCT--TCGTCAAAGCCGTACTCCAGGAGC 225682
||| |||| | || | ||| || | | || ||| |||||| | || | ||||
Sbjct 1261493 GGAAAGGGCGGAAATCTCACCAG--TGATCATCTGCTCGGTGAAGCCGAAGTCAATGAGC 1261436
Query 225683 GTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGA----- 225737
|| ||| | ||| | | | || | ||||||| ||| | | ||
Sbjct 1261435 TGCTTGATGACATTCTCCTTGGTGGT---AGTG---ACGTTGGCGTCAG-CTAGCTTCTT 1261383
Query 225738 ---GGT--AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTA 225792
||| | ||| |||||| || | ||| | ||| | |||||| || ||| |
Sbjct 1261382 CATGGTCCAGTCAATGGTGGTCATCTCGGTATCAGCAGAGTCCAGGTCGTGCTCGACGAA 1261323
Query 225793 CACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACG 225852
|| ||| || || || | ||||| ||||| | ||| | || || |||||
Sbjct 1261322 GACAGTCTTGACCTCGGACTGCTTAGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACG 1261263
Query 225853 GAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTT 225912
| ||| ||| |||||| | |||||||||||| || ||||| | | || |||||
Sbjct 1261262 CATCAGAGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGACCACGCTT 1261203
Query 225913 GATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCA 225972
| | ||| | || ||| || || |||||| |||| |||||||||||||| |||
Sbjct 1261202 CAGGCGCAGGTGGGTCTGGTTAAGCAGAATCTTGGCACCGTAGGCAAGGGAGAAAGTGCA 1261143
Query 225973 ATCGCACAGGTCCTCACCCTCCTCG 225997
| ||||||||||||||||||||||
Sbjct 1261142 GTTGCACAGGTCCTCACCCTCCTCG 1261118
>seq10
Length=988720
Score = 132 bits (146), Expect = 9e-26
Identities = 142/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || || || || || | || || || | |||||| || ||||| ||
Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| || |||||||| |||||||| |||||||| | |||||| |||
Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453
|| ||||| | || || || || | ||| || || || ||||| ||||||||||||||
Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328
Query 68454 ATCTGCAT 68461
||||||||
Sbjct 887329 ATCTGCAT 887336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622261756640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |