Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 2e-23
seq10 98.7 2e-15
seq4 91.5 3e-13
seq8 84.2 5e-11
>seq3
Length=3916844
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | || |||||||| | ||| || ||||| || || |||||||
Sbjct 1905209 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 1905268
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || ||||| || |||||||| ||||| || |||
Sbjct 1905269 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 1905328
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || ||||| || || | ||| || || |||
Sbjct 1905329 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGACT 1905388
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| || ||||| ||||||||||| || |||||
Sbjct 1905389 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435
>seq10
Length=988720
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/191 (72%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||| | || ||||| ||||| || | || || || |||||||||
Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||| || || ||| || || || || ||||| || || | || || ||
Sbjct 887209 AGGCGCTGCTG---GTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 887265
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| || || || || ||||| || |||||||| || || || |||||||||
Sbjct 887266 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 887325
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 887326 AAAATCTGCAT 887336
>seq4
Length=2525909
Score = 91.5 bits (100), Expect = 3e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212
|||| ||||| ||||| |||||||| || || || || ||||| || || || | ||
Sbjct 2287158 TCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTGCTCG 2287217
Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAA 269272
|| ||||| | || || || ||| | | || ||||| | ||||||||| |
Sbjct 2287218 TCGCCCTCGGAAACGAAAAGGTCTACCGCGCCACCAACCCCTTTGACTTTATGGAGAACA 2287277
Query 269273 TTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAA 269325
| ||||||| || ||||| ||||||||||| ||||| || ||||||| |||
Sbjct 2287278 TCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGACTACCAA 2287330
>seq8
Length=1110981
Score = 84.2 bits (92), Expect = 5e-11
Identities = 152/221 (69%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || || | ||| || || ||||| || |||||||
Sbjct 478883 CCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 478942
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || || |||||||| ||||| || || |||
Sbjct 478943 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGG---TCCGGG 478999
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || |||||||| || | || ||||| || || | || || ||
Sbjct 479000 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 479059
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| || || || || ||||| || ||||| |||||||||||
Sbjct 479060 ACCTCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 479100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654218628136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |