Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 123 5e-23 >seq4 Length=2525909 Score = 123 bits (136), Expect = 5e-23 Identities = 300/453 (66%), Gaps = 6/453 (1%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| |||| || ||||||| | ||| || || || | || || || |||| Sbjct 2286881 TTTGCCCAGCGCCTGGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTTTC 2286940 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 | ||||||| |||||||| || || | ||||||||||| | || |||||| Sbjct 2286941 GCCTCCATCTTCTGGCTGCGCAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAACGAG 2287000 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 | ||| || ||||||||||| ||| | || | || ||| || | ||| Sbjct 2287001 CTGATCTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGTCTGCTGTTCTCGCACCTC 2287060 Query 243469 CAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 ||||| | || | | | ||| | || |||||||| || || || | | Sbjct 2287061 ---AACAACCGCCCCAGCAAGCAGCTAGTCGAGCAGATCATCACCGATGCTGTCGTCATT 2287117 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || ||||| ||| | ||| || | || || | || | ||||||||| | || ||| Sbjct 2287118 GAGAAGGAGTTCCTGACCGAGGCCCTGCCCTGTGGCCTCCTCGGCATGAACGCCGACCTC 2287177 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| |||||||| || ||||| ||||||||| | || |||| || || | || || Sbjct 2287178 ATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGAAACGAAAAG 2287237 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 || ||| | ||| |||||||||| |||||||||| ||| ||||| || || || Sbjct 2287238 GTCTACCGCGCCACCAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGCGGCAAGACC 2287297 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||||||||||| ||||| || | || || ||| Sbjct 2287298 AACTTCTTCGAGAAGCGCGTGGGCGACTACCAA 2287330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879830432200