Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 seq10 100 3e-16 seq8 89.7 6e-13 >seq3 Length=3916844 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||| |||||||||||| ||||| || | || || || | || || ||||| Sbjct 1905232 ATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTG 1905291 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| ||||| || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 1905292 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 1905351 Query 42125 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 |||| ||| | | | ||||||| || || || |||| |||||||| || || | Sbjct 1905352 GGACTTGA-CGTTGTCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATGGTCTTTCCAG 1905410 Query 42184 TTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || ||||||||||| Sbjct 1905411 TCAGGGTCTTGACGAAGATTTGCAT 1905435 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||||| |||| ||||| || ||||| || || ||||| || | Sbjct 1904924 CCTCCACGCAGACGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAG 1904983 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| |||||||| ||||| ||||||||||| | || Sbjct 1904984 AGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1905043 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || ||||||||| ||| || |||| ||| | | | || || || || || Sbjct 1905044 ATGCCCTCCTTGTCTTGGATCTTGGACTTGA-CGTTGTCAATGGTATCAGAGGACTCGAC 1905102 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 |||| || ||||| || || || || ||||| || Sbjct 1905103 TTCGAGAGTTATGGTCTTTCCAGTCAGGGTCTTGAC 1905138 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||| ||| || || || ||||| || | || || || | || || ||||| Sbjct 1905460 ATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTG 1905519 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| ||||| || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 1905520 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 1905579 Query 42125 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 |||| | | | ||||||| | |||||| || | |||||||| ||||| || Sbjct 1905580 GGACTTGACATTGTCGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTCTTGCCGGT 1905639 >seq10 Length=988720 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| |||| ||| || || |||| || ||||||||||||||||| | Sbjct 887147 CCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGA 887206 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 42137 | || ||||||||||| | || | || |||||||||| ||| | || | |||| | Sbjct 887207 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 887265 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || || || |||| || || || || ||||| || ||||| || Sbjct 887266 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 887325 Query 42198 AAGATTTGCATTTTCAC 42214 || || ||||| || || Sbjct 887326 AAAATCTGCATCTTGAC 887342 >seq8 Length=1110981 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||| || | ||| |||||| || || ||||| || | ||| || || | Sbjct 478894 ACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 478953 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || || ||||||||||| | || | || |||||| Sbjct 478954 ATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 479013 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || |||| ||| | | | |||||| || || || || | || | Sbjct 479014 GTCCTGGATCTTGGACTTGA-CGTTGTCGATCGTGTCCGAAGACTCGACCTCTAGGGTAA 479072 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAA 42199 |||| || ||||| || ||||| || || Sbjct 479073 TGGTCTTACCCGTCAGGGTCTTGACGAA 479100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212718518080