Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3 120 3e-22
seq10 100 3e-16
seq8 89.7 6e-13
>seq3
Length=3916844
Score = 120 bits (132), Expect = 3e-22
Identities = 151/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064
||||| ||| |||||||||||| ||||| || | || || || | || || |||||
Sbjct 1905232 ATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTG 1905291
Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124
||| ||||| || || || ||||||||||| | || | || |||||||||| ||| ||
Sbjct 1905292 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 1905351
Query 42125 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183
|||| ||| | | | ||||||| || || || |||| |||||||| || || |
Sbjct 1905352 GGACTTGA-CGTTGTCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATGGTCTTTCCAG 1905410
Query 42184 TTAGCGTCTTTACAAAGATTTGCAT 42208
| || ||||| || |||||||||||
Sbjct 1905411 TCAGGGTCTTGACGAAGATTTGCAT 1905435
Score = 86.0 bits (94), Expect = 7e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| | | ||||| |||| ||||| || ||||| || || ||||| || |
Sbjct 1904924 CCTCCACGCAGACGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAG 1904983
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||| || | || || |||||||| |||||||| ||||| ||||||||||| | ||
Sbjct 1904984 AGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1905043
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160
| || ||||||||| ||| || |||| ||| | | | || || || || ||
Sbjct 1905044 ATGCCCTCCTTGTCTTGGATCTTGGACTTGA-CGTTGTCAATGGTATCAGAGGACTCGAC 1905102
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
|||| || ||||| || || || || ||||| ||
Sbjct 1905103 TTCGAGAGTTATGGTCTTTCCAGTCAGGGTCTTGAC 1905138
Score = 82.4 bits (90), Expect = 8e-11
Identities = 126/180 (70%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064
||||| ||| ||| || || || ||||| || | || || || | || || |||||
Sbjct 1905460 ATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTG 1905519
Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124
||| ||||| || || || ||||||||||| | || | || |||||||||| ||| ||
Sbjct 1905520 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 1905579
Query 42125 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184
|||| | | | ||||||| | |||||| || | |||||||| ||||| ||
Sbjct 1905580 GGACTTGACATTGTCGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTCTTGCCGGT 1905639
>seq10
Length=988720
Score = 100 bits (110), Expect = 3e-16
Identities = 142/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| |||| ||| || || |||| || ||||||||||||||||| |
Sbjct 887147 CCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGA 887206
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 42137
| || ||||||||||| | || | || |||||||||| ||| | || | |||| |
Sbjct 887207 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 887265
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | ||||| || || || |||| || || || || ||||| || ||||| ||
Sbjct 887266 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 887325
Query 42198 AAGATTTGCATTTTCAC 42214
|| || ||||| || ||
Sbjct 887326 AAAATCTGCATCTTGAC 887342
>seq8
Length=1110981
Score = 89.7 bits (98), Expect = 6e-13
Identities = 146/208 (70%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| |||| || | ||| |||||| || || ||||| || | ||| || || |
Sbjct 478894 ACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 478953
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| ||||| || || || ||||||||||| | || | || ||||||
Sbjct 478954 ATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 479013
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
|||| ||| || |||| ||| | | | |||||| || || || || | || |
Sbjct 479014 GTCCTGGATCTTGGACTTGA-CGTTGTCGATCGTGTCCGAAGACTCGACCTCTAGGGTAA 479072
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAA 42199
|||| || ||||| || ||||| || ||
Sbjct 479073 TGGTCTTACCCGTCAGGGTCTTGACGAA 479100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212718518080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |