Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 141 9e-29 seq3 95.1 1e-14 seq10 89.7 5e-13 seq8 84.2 2e-11 >seq4 Length=2525909 Score = 141 bits (156), Expect = 9e-29 Identities = 348/519 (67%), Gaps = 23/519 (4%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CC 52385 |||||| | ||| ||||| | ||||| | ||||||||| | ||||| | | Sbjct 2286821 CCGTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAGTGGATC---ACCGACAAGGAGTCG 2286877 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | ||| ||||| |||| ||||| ||| ||||||||| | || || || ||| || Sbjct 2286878 ACCTTTGCCCAGCGCCTGGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGC-GC 2286936 Query 52446 TTT-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 ||| ||| ||||||| | | | | ||| | ||||| |||||||| ||| ||| Sbjct 2286937 TTTCGCCTCCATCTTCTGGCTGCGCAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAA 2286996 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGAC 52564 |||| |||| ||||| ||||| || |||||||| |||||||| || ||| || | Sbjct 2286997 CGAGCTGATCTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTG--TCTGCTGTT---C 2287051 Query 52565 GCGCGTGACCGAAAAATTGGATTCGGACACGATCCT----GAGCATGT--TCAAGGAGGC 52618 ||| ||| || | | | | || | || ||||| | ||| || || Sbjct 2287052 TCGC---ACCTCAACAACCGCCCCAG-CAAGCAGCTAGTCGAGCAGATCATCACCGATGC 2287107 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 || | || || |||||||| | || | || ||||| | || || |||||||| Sbjct 2287108 TGTCGTCATTGAGAAGGAGTTCCTGACCGAGGCCCTGCCCTGTGGCCTCCTCGGCATGAA 2287167 Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 ||| | |||| ||||||| ||||| || || || || ||| | || ||||| Sbjct 2287168 CGCCGACCTCATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGG 2287227 Query 52739 GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 | |||| || | ||| ||| || ||||| |||||| | ||||| ||||| | Sbjct 2287228 AAACGAAAAGGTCTACCGCGCCACCAACCCCTTTGACTTTATGGAGAACATCTCGCTCGG 2287287 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||| ||||||||||| || ||||| || Sbjct 2287288 CGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGACTA 2287326 >seq3 Length=3916844 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | ||| | | |||||||||||||||||||||||| Sbjct 1905209 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 1905268 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || || || || | | |||| || ||||| |||||||| || Sbjct 1905269 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 1905328 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||||| ||||| || Sbjct 1905329 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGACT 1905388 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || || ||||| Sbjct 1905389 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435 >seq10 Length=988720 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| || || || |||||| || || ||||| | ||| Sbjct 887147 CCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGA 887206 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTG 138542 | || ||||| |||||||| || || || || ||||| ||| | || | || |||| Sbjct 887207 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTG 887265 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||| ||||||| || | ||| ||||| || || || || || Sbjct 887266 -TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 887324 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 887325 GAAAATCTGCAT 887336 >seq8 Length=1110981 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| ||| | || | | | |||||||| || |||||||||||| | Sbjct 478883 CCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 478942 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | | |||| || ||||| |||||||| || Sbjct 478943 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 479002 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||| | ||||| ||| Sbjct 479003 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 479062 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 || | || | || ||||| ||||| || || || ||| Sbjct 479063 TCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 479101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262325560640