Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq4 179 4e-40
seq3 120 3e-22
seq8 111 1e-19
seq10 96.9 3e-15
>seq4
Length=2525909
Score = 179 bits (198), Expect = 4e-40
Identities = 374/549 (68%), Gaps = 35/549 (6%)
Strand=Plus/Plus
Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105
|| || |||| |||| | ||| || ||| | ||| | |||||||| |||||| | |||
Sbjct 2286797 CTCTTCAACGCCATCGATACCATCCCGTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAG 2286856
Query 47106 TACATTGAAAACGAAAACG--TC-ACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTC 47162
| || | ||| || | || || | ||| | || || |||| || ||| ||||
Sbjct 2286857 TGGATC---ACCGACAAGGAGTCGACCTTTGCCCAGCGCCTGGTCGCCTTTGCCGCCGTC 2286913
Query 47163 GAGGGCGTCTTCTTCTCGGGCAGCTTT-GCGGCGATATTTTACATGAAAACCAAAGGAGT 47221
|||||| |||||||||||||| ||||| || | || || | || | || |
Sbjct 2286914 GAGGGCATCTTCTTCTCGGGC-GCTTTCGCCTCCATCTTCTGGCTGCGCAAGCGCGGCCT 2286972
Query 47222 TATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAA 47281
||||| ||||| || || ||||||||| |||||| | ||||| |||||||||||| |
Sbjct 2286973 CATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGCCTGCACACCGA 2287032
Query 47282 CTTTGCCTGTCTC---TACTA-CAACACTAGAGTCG----ATCAAA-AGTTGGACGTGCC 47332
|||||||||||| | || || | | | | || | ||| || | | || ||
Sbjct 2287033 CTTTGCCTGTCTGCTGTTCTCGCACCTCAACAACCGCCCCAGCAAGCAGCTAGTCGAGCA 2287092
Query 47333 CACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGC 47392
| | ||| |||| || |||| |||||||| |||||| | |||||||
Sbjct 2287093 GATCATCA------------CCGATGCTGTCGTCATTGAGAAGGAGTTCCTGACCGAGGC 2287140
Query 47393 TCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGT 47452
|||||| | | || |||||||| || | |||| ||||||| || || ||
Sbjct 2287141 CCTGCCCTGTGGCCTCCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTCGT 2287200
Query 47453 CGCCGACCGCCTGCTCGTTCAGCT---AAAGTATCCCAAGATTTACCACACCGAGAATCC 47509
|||||||||||||||||| || ||| | ||| | |||| | || || ||
Sbjct 2287201 CGCCGACCGCCTGCTCGTCGCCCTCGGAAACGAA---AAGGTCTACCGCGCCACCAACCC 2287257
Query 47510 ATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569
|| || |||||| | ||||| ||||||| |||||||||||||| ||||||||||||||
Sbjct 2287258 CTTTGACTTTATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGT 2287317
Query 47570 CGGCGAATA 47578
||||| ||
Sbjct 2287318 GGGCGACTA 2287326
>seq3
Length=3916844
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | || | ||| | || ||||| |||||||| ||||| |||
Sbjct 1905209 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 1905268
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || ||||| |||||||| |||||| |||||||| || || ||
Sbjct 1905269 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 1905328
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| ||||| | | ||||||
Sbjct 1905329 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATCGTGTCGGAAGACTCGAC 1905387
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| || | || || || ||||| || || || || || |||||
Sbjct 1905388 TTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435
Score = 100 bits (110), Expect = 3e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| |||||||| || || ||||| ||| | || || ||| || ||||| ||||||
Sbjct 1905467 GTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCA 1905526
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||||| |||||||| || ||||| ||||||||||||||| ||| || ||||
Sbjct 1905527 GCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1905586
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| | |||| ||||| | | | || || || | ||| | || ||||||||||
Sbjct 1905587 ACATTGTCGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 1905641
Score = 86.0 bits (94), Expect = 6e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| |||| ||| | ||||| || || || || ||||| || | |||||| |
Sbjct 1904936 CGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGACCA 1904995
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || |||||| | || | |||||||| || || || ||||||||||||
Sbjct 1904996 TCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 1905055
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|| ||| || ||||| |||| || | ||| || | ||||||||||| || |
Sbjct 1905056 TCTTGGATCTTGGACTTGACGTTG-TCAATGGTATCAGAGGACTCGACTTCGAGAGTTAT 1905114
Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101
|| || || ||||| || || ||
Sbjct 1905115 GGTCTTTCCAGTCAGGGTCTTGAC 1905138
>seq8
Length=1110981
Score = 111 bits (122), Expect = 1e-19
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||| || | || ||||| || || || ||||| ||| |
Sbjct 478883 CCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 478942
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || ||||| |||||| |||||||| || || ||
Sbjct 478943 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 479002
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| ||||||| | ||||||
Sbjct 479003 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATCGTGTCCGAAGACTCGAC 479061
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
|| | ||| | || || || ||||| || || || |||
Sbjct 479062 CTCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 479101
Score = 102 bits (112), Expect = 8e-17
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122
||||||| ||||| ||||||||||| ||||| || | | | || | |||| ||| | |
Sbjct 323811 GGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGG 323870
Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182
|||| || ||||||||||||| || ||||||| ||| | || || |||||| || |
Sbjct 323871 GCTCAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAA 323930
Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCC 146223
|||| | |||||| | || ||||| | |||||| |||
Sbjct 323931 CCAGGAGAGAGTTGCGGACACCGTGCTGCTTAATCTTCTCC 323971
>seq10
Length=988720
Score = 96.9 bits (106), Expect = 3e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| || || ||||| || || ||||| || |||||| |||||
Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| |||||||| || || || ||||||||||||||| || || ||||| | |||
Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||||| ||| || |||| ||| | ||| || || || || || || || |||
Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328
Query 127106 ATCTGCAT 127113
||||||||
Sbjct 887329 ATCTGCAT 887336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500728674880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |