Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 179 4e-40 seq3 120 3e-22 seq8 111 1e-19 seq10 96.9 3e-15 >seq4 Length=2525909 Score = 179 bits (198), Expect = 4e-40 Identities = 374/549 (68%), Gaps = 35/549 (6%) Strand=Plus/Plus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| |||| | ||| || ||| | ||| | |||||||| |||||| | ||| Sbjct 2286797 CTCTTCAACGCCATCGATACCATCCCGTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAG 2286856 Query 47106 TACATTGAAAACGAAAACG--TC-ACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTC 47162 | || | ||| || | || || | ||| | || || |||| || ||| |||| Sbjct 2286857 TGGATC---ACCGACAAGGAGTCGACCTTTGCCCAGCGCCTGGTCGCCTTTGCCGCCGTC 2286913 Query 47163 GAGGGCGTCTTCTTCTCGGGCAGCTTT-GCGGCGATATTTTACATGAAAACCAAAGGAGT 47221 |||||| |||||||||||||| ||||| || | || || | || | || | Sbjct 2286914 GAGGGCATCTTCTTCTCGGGC-GCTTTCGCCTCCATCTTCTGGCTGCGCAAGCGCGGCCT 2286972 Query 47222 TATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAA 47281 ||||| ||||| || || ||||||||| |||||| | ||||| |||||||||||| | Sbjct 2286973 CATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGCCTGCACACCGA 2287032 Query 47282 CTTTGCCTGTCTC---TACTA-CAACACTAGAGTCG----ATCAAA-AGTTGGACGTGCC 47332 |||||||||||| | || || | | | | || | ||| || | | || || Sbjct 2287033 CTTTGCCTGTCTGCTGTTCTCGCACCTCAACAACCGCCCCAGCAAGCAGCTAGTCGAGCA 2287092 Query 47333 CACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGC 47392 | | ||| |||| || |||| |||||||| |||||| | ||||||| Sbjct 2287093 GATCATCA------------CCGATGCTGTCGTCATTGAGAAGGAGTTCCTGACCGAGGC 2287140 Query 47393 TCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGT 47452 |||||| | | || |||||||| || | |||| ||||||| || || || Sbjct 2287141 CCTGCCCTGTGGCCTCCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTCGT 2287200 Query 47453 CGCCGACCGCCTGCTCGTTCAGCT---AAAGTATCCCAAGATTTACCACACCGAGAATCC 47509 |||||||||||||||||| || ||| | ||| | |||| | || || || Sbjct 2287201 CGCCGACCGCCTGCTCGTCGCCCTCGGAAACGAA---AAGGTCTACCGCGCCACCAACCC 2287257 Query 47510 ATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 || || |||||| | ||||| ||||||| |||||||||||||| |||||||||||||| Sbjct 2287258 CTTTGACTTTATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGT 2287317 Query 47570 CGGCGAATA 47578 ||||| || Sbjct 2287318 GGGCGACTA 2287326 >seq3 Length=3916844 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || ||||| |||||||| ||||| ||| Sbjct 1905209 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 1905268 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| |||||||| |||||| |||||||| || || || Sbjct 1905269 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 1905328 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| ||||| | | |||||| Sbjct 1905329 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATCGTGTCGGAAGACTCGAC 1905387 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | || || || ||||| || || || || || ||||| Sbjct 1905388 TTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | || || ||| || ||||| |||||| Sbjct 1905467 GTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCA 1905526 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || ||||| ||||||||||||||| ||| || |||| Sbjct 1905527 GCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1905586 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | | |||| ||||| | | | || || || | ||| | || |||||||||| Sbjct 1905587 ACATTGTCGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 1905641 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| ||| | ||||| || || || || ||||| || | |||||| | Sbjct 1904936 CGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGACCA 1904995 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | || | |||||||| || || || |||||||||||| Sbjct 1904996 TCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 1905055 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || ||| || ||||| |||| || | ||| || | ||||||||||| || | Sbjct 1905056 TCTTGGATCTTGGACTTGACGTTG-TCAATGGTATCAGAGGACTCGACTTCGAGAGTTAT 1905114 Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101 || || || ||||| || || || Sbjct 1905115 GGTCTTTCCAGTCAGGGTCTTGAC 1905138 >seq8 Length=1110981 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| || | || ||||| || || || ||||| ||| | Sbjct 478883 CCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 478942 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||||| |||||||| || || || Sbjct 478943 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 479002 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| ||||||| | |||||| Sbjct 479003 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATCGTGTCCGAAGACTCGAC 479061 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || | ||| | || || || ||||| || || || ||| Sbjct 479062 CTCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 479101 Score = 102 bits (112), Expect = 8e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| ||||| ||||||||||| ||||| || | | | || | |||| ||| | | Sbjct 323811 GGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGG 323870 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 |||| || ||||||||||||| || ||||||| ||| | || || |||||| || | Sbjct 323871 GCTCAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAA 323930 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCC 146223 |||| | |||||| | || ||||| | |||||| ||| Sbjct 323931 CCAGGAGAGAGTTGCGGACACCGTGCTGCTTAATCTTCTCC 323971 >seq10 Length=988720 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || || ||||| || || ||||| || |||||| ||||| Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| || || ||||| | ||| Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| ||| || |||| ||| | ||| || || || || || || || ||| Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328 Query 127106 ATCTGCAT 127113 |||||||| Sbjct 887329 ATCTGCAT 887336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500728674880