Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq10 84.2 2e-11 >seq3 Length=3916844 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || |||||||| || || |||||||| || || || ||| Sbjct 1905206 ATACCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCG 1905265 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || ||||| || | |||| || ||||||||||| Sbjct 1905266 GAAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGG 1905325 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || |||| || | || | |||||||||||||| Sbjct 1905326 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATCGTGTCGGAAGACTC 1905384 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||||| | || || || || || || || || || |||||||| Sbjct 1905385 GACTTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | || || |||||||| || |||||||| ||||| || || || | Sbjct 1904924 CCTCCACGCAGACGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAG 1904983 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | || || || ||| | || | || ||||||||||| || Sbjct 1904984 AGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1905043 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || ||||| || || |||| || | || | ||| || || |||||||| Sbjct 1905044 ATGCCCTCCTTGTCTTGGATCTTGGACTTGA-CGTTGTCAATGGTATCAGAGGACTCGAC 1905102 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||||||||| | || || || || || || || || Sbjct 1905103 TTCGAGAGTTATGGTCTTTCCAGTCAGGGTCTTGAC 1905138 >seq10 Length=988720 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| || || || ||| | |||| || ||||||||||| |||||||| || || Sbjct 887182 TCCTCCAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 887241 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || ||||| || |||| || | ||||| || ||||| || ||||| |||| | Sbjct 887242 TCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATC 887301 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || || || || ||||| |||||| Sbjct 887302 GTCTTACCCGTAAGGGTCTTGACGAAAATCTGCATC 887337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003132199520