Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq8 167 3e-36 seq4 159 4e-34 >seq8 Length=1110981 Score = 167 bits (184), Expect = 3e-36 Identities = 668/1032 (65%), Gaps = 26/1032 (3%) Strand=Plus/Plus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| ||||| || || || || | | | || ||||||| ||||| ||| Sbjct 323813 TTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGGGC 323872 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 ||||||||||| |||||||||| ||| || | || ||| |||||||||||||| | Sbjct 323873 TCAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAACC 323932 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 116043 || || |||||||| ||| | | |||| |||||||||| |||||| | Sbjct 323933 AGGAGAGAGTTGCGGACACCGTGCTGCTTAATCTTCTCCTTGAGGGAAGTCCAGTCCCA- 323991 Query 116044 TTGAGC-TTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGA 116102 || | | | | | | |||||||| ||||| || ||||| || || || | ||||| Sbjct 323992 AAGATCGCTGGGCGTCACATCCCACATGTCAAATTGCAGGATGCCCTGCGAGACCGGCGA 324051 Query 116103 TCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC---GGAGCTCGCCTCGAG 116159 |||||| | || |||| ||||||| || || | || ||| ||| || Sbjct 324052 GCCCTCATAAGTAGAGTATGTGCCCTCAGTCTGGGCAATCTCCATTGAG---GCCGTCAG 324108 Query 116160 GGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAAT 116218 || ||||| || || ||||||||||| | |||| || | |||||| || | Sbjct 324109 CGCAGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTGAC-GAGCCTCGGGAGACT 324167 Query 116219 CAAACGCGAGACGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATT 116277 |||| | | | ||| | | || |||| || ||||| |||||||||| ||||| Sbjct 324168 CAAAAGGCATGC-GCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACACCAATC 324226 Query 116278 GGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCG 116334 ||||| || | ||| || || | | || |||| || || || ||| ||| Sbjct 324227 GGGCGGTGGCGCATGTT--GCTGTTG-TAGGCCTCCGTGACAGGGTAGTGGTTCACATCA 324283 Query 116335 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 116394 || | | || || || | || |||| ||||| ||||||||||||| | | || Sbjct 324284 ATGATGCGGTTCAGGTTGCGGACAACGACCTGTGTGACTTCATGAAGCTTTCCAAAGTCG 324343 Query 116395 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454 | || | | | | ||| | || ||||| | || ||||| || |||||| Sbjct 324344 TACTCGCCCTTGTTGTAGTCAACAAATGAGGGCAGGGCAAGAGAGGCCAGGTTGCACACA 324403 Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATG 116514 | |||||| || |||||| ||||| || || |||| || || || |||| Sbjct 324404 GCAACCTCATCGGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGAATG 324463 Query 116515 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGC 116574 || |||| |||||| || || ||| ||| || |||||||| |||||| | || Sbjct 324464 GTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTGTCCTTGTAAAGCATAAAGGGA 324523 Query 116575 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGG--CACA 116631 | || ||||| || |||| || ||||| || | ||| | | || | | | | || Sbjct 324524 TTGCCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGAGCTTTGATAACC 324583 Query 116632 GTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCC 116691 | ||| | | || || |||| ||||||||| ||| || || |||||||| || || Sbjct 324584 AT-GCG--GCCACGGCCTTCCTTTTCGTACTTTTCGTACAGAGCTTCAAACTCATC-GCC 324639 Query 116692 ACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTC 116750 ||| || | || || || || | || || | |||| ||| | | || Sbjct 324640 GTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCCTCGTTCTT 324699 Query 116751 CTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCG 116810 |||||| ||||||||||| ||||| |||||| || ||| ||| | || || || Sbjct 324700 CTCAACACGCTTCATGAACAGGTCGCAGATCCACAGAGCCAGGAACAAGTCGCGGGCACG 324759 Query 116811 AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCA 116870 | | ||||| | || || || |||| || | || || | | || |||||||| Sbjct 324760 AACCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAGGAACTCAAACACGTCGGCGTGCCA 324819 Query 116871 CGGTTCCAGGTA 116882 ||||||||||| Sbjct 324820 GGGTTCCAGGTA 324831 >seq4 Length=2525909 Score = 159 bits (176), Expect = 4e-34 Identities = 533/813 (66%), Gaps = 15/813 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| ||||| || |||| ||| |||||||| Sbjct 2287327 GTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCAT 2287268 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCACCCCAATCTGTTTGAGGAGAC 127349 ||| ||||| ||||| | | | | | | || | || | | ||| || | Sbjct 2287267 AAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTTCCGAGGGCGAC-GAGCAGGC 2287209 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | |||| |||||||||||| ||| || | |||||| |||| |||| || Sbjct 2287208 GGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGGAGGCCAC 2287149 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG-GCG 127468 | || || || || | |||| ||||||||||| | ||||| || | ||| || Sbjct 2287148 AGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGCATCGGTGATGATCTGCT 2287089 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAG-CAAACT 127526 || ||| | | | || | ||| | | || | ||| || |||| |||| | Sbjct 2287088 CGACTAGC-TGCTTGCTGGGGCGGTTGT-TGAGGTGCGAGAACAGCAG-ACAGGCAAAGT 2287032 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||| || ||||||||||| ||||| || || || |||||| ||| || ||||||| Sbjct 2287031 CGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATGA 2286972 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | || ||||| || |||||| || | || | ||| ||||||||||| ||||| | Sbjct 2286971 GGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAGATGCCCTCGA 2286912 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTC 127705 | || || || | || |||| |||||||| || | |||| | |||||| Sbjct 2286911 CGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGG-TCGACTCCTTGTCGGTGATCCACTTG 2286853 Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCC 127765 | ||||| | ||||| ||| || |||| ||| | ||| || | ||||| | Sbjct 2286852 AGGGCCCAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTGAAGAGGTAG 2286793 Query 127766 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGG 127825 | | || || || |||||||| | || || || || || || ||| |||| Sbjct 2286792 GTGCGCTGCGAGGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTACGTCTCGGAGTGG 2286733 Query 127826 ACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 127884 | | | ||| || | ||| | ||||||| |||| || ||| ||||| ||||| Sbjct 2286732 ATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTC 2286674 Query 127885 ATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 127944 ||| ||| | || ||||| || || || ||||| | || || || || Sbjct 2286673 GCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCGGCGAAGAAGGC 2286614 Query 127945 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAG 128001 ||||| | | ||||| | |||||||| || ||||| || | |||||||||| || Sbjct 2286613 GAGGATGTGCGAGATGAAGTACTGTTCATCCTTGTTCAGGCGGTTGTTCCAGTCGTGAAG 2286554 Query 128002 ATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||| || || || | ||||| |||||||| Sbjct 2286553 GTCCTTGGACAGGTCAATTTCCTCGGCAGTCCA 2286521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507107973920