Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq8 167 3e-36
seq4 159 4e-34
>seq8
Length=1110981
Score = 167 bits (184), Expect = 3e-36
Identities = 668/1032 (65%), Gaps = 26/1032 (3%)
Strand=Plus/Plus
Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923
|||||||| ||||| || || || || | | | || ||||||| ||||| |||
Sbjct 323813 TTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGGGC 323872
Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983
||||||||||| |||||||||| ||| || | || ||| |||||||||||||| |
Sbjct 323873 TCAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAACC 323932
Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 116043
|| || |||||||| ||| | | |||| |||||||||| |||||| |
Sbjct 323933 AGGAGAGAGTTGCGGACACCGTGCTGCTTAATCTTCTCCTTGAGGGAAGTCCAGTCCCA- 323991
Query 116044 TTGAGC-TTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGA 116102
|| | | | | | | |||||||| ||||| || ||||| || || || | |||||
Sbjct 323992 AAGATCGCTGGGCGTCACATCCCACATGTCAAATTGCAGGATGCCCTGCGAGACCGGCGA 324051
Query 116103 TCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC---GGAGCTCGCCTCGAG 116159
|||||| | || |||| ||||||| || || | || ||| ||| ||
Sbjct 324052 GCCCTCATAAGTAGAGTATGTGCCCTCAGTCTGGGCAATCTCCATTGAG---GCCGTCAG 324108
Query 116160 GGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAAT 116218
|| ||||| || || ||||||||||| | |||| || | |||||| || |
Sbjct 324109 CGCAGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTGAC-GAGCCTCGGGAGACT 324167
Query 116219 CAAACGCGAGACGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATT 116277
|||| | | | ||| | | || |||| || ||||| |||||||||| |||||
Sbjct 324168 CAAAAGGCATGC-GCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACACCAATC 324226
Query 116278 GGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCG 116334
||||| || | ||| || || | | || |||| || || || ||| |||
Sbjct 324227 GGGCGGTGGCGCATGTT--GCTGTTG-TAGGCCTCCGTGACAGGGTAGTGGTTCACATCA 324283
Query 116335 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 116394
|| | | || || || | || |||| ||||| ||||||||||||| | | ||
Sbjct 324284 ATGATGCGGTTCAGGTTGCGGACAACGACCTGTGTGACTTCATGAAGCTTTCCAAAGTCG 324343
Query 116395 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454
| || | | | | ||| | || ||||| | || ||||| || ||||||
Sbjct 324344 TACTCGCCCTTGTTGTAGTCAACAAATGAGGGCAGGGCAAGAGAGGCCAGGTTGCACACA 324403
Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATG 116514
| |||||| || |||||| ||||| || || |||| || || || ||||
Sbjct 324404 GCAACCTCATCGGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGAATG 324463
Query 116515 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGC 116574
|| |||| |||||| || || ||| ||| || |||||||| |||||| | ||
Sbjct 324464 GTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTGTCCTTGTAAAGCATAAAGGGA 324523
Query 116575 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGG--CACA 116631
| || ||||| || |||| || ||||| || | ||| | | || | | | | ||
Sbjct 324524 TTGCCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGAGCTTTGATAACC 324583
Query 116632 GTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCC 116691
| ||| | | || || |||| ||||||||| ||| || || |||||||| || ||
Sbjct 324584 AT-GCG--GCCACGGCCTTCCTTTTCGTACTTTTCGTACAGAGCTTCAAACTCATC-GCC 324639
Query 116692 ACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTC 116750
||| || | || || || || | || || | |||| ||| | | ||
Sbjct 324640 GTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCCTCGTTCTT 324699
Query 116751 CTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCG 116810
|||||| ||||||||||| ||||| |||||| || ||| ||| | || || ||
Sbjct 324700 CTCAACACGCTTCATGAACAGGTCGCAGATCCACAGAGCCAGGAACAAGTCGCGGGCACG 324759
Query 116811 AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCA 116870
| | ||||| | || || || |||| || | || || | | || ||||||||
Sbjct 324760 AACCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAGGAACTCAAACACGTCGGCGTGCCA 324819
Query 116871 CGGTTCCAGGTA 116882
|||||||||||
Sbjct 324820 GGGTTCCAGGTA 324831
>seq4
Length=2525909
Score = 159 bits (176), Expect = 4e-34
Identities = 533/813 (66%), Gaps = 15/813 (2%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| || || ||||||||||||||||| ||||| || |||| ||| ||||||||
Sbjct 2287327 GTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCAT 2287268
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCACCCCAATCTGTTTGAGGAGAC 127349
||| ||||| ||||| | | | | | | || | || | | ||| || |
Sbjct 2287267 AAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTTCCGAGGGCGAC-GAGCAGGC 2287209
Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409
| || | |||| |||||||||||| ||| || | |||||| |||| |||| ||
Sbjct 2287208 GGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGGAGGCCAC 2287149
Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG-GCG 127468
| || || || || | |||| ||||||||||| | ||||| || | ||| ||
Sbjct 2287148 AGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGCATCGGTGATGATCTGCT 2287089
Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAG-CAAACT 127526
|| ||| | | | || | ||| | | || | ||| || |||| |||| |
Sbjct 2287088 CGACTAGC-TGCTTGCTGGGGCGGTTGT-TGAGGTGCGAGAACAGCAG-ACAGGCAAAGT 2287032
Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586
| ||| || ||||||||||| ||||| || || || |||||| ||| || |||||||
Sbjct 2287031 CGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATGA 2286972
Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646
| || ||||| || |||||| || | || | ||| ||||||||||| ||||| |
Sbjct 2286971 GGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAGATGCCCTCGA 2286912
Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTC 127705
| || || || | || |||| |||||||| || | |||| | ||||||
Sbjct 2286911 CGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGG-TCGACTCCTTGTCGGTGATCCACTTG 2286853
Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCC 127765
| ||||| | ||||| ||| || |||| ||| | ||| || | ||||| |
Sbjct 2286852 AGGGCCCAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTGAAGAGGTAG 2286793
Query 127766 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGG 127825
| | || || || |||||||| | || || || || || || ||| ||||
Sbjct 2286792 GTGCGCTGCGAGGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTACGTCTCGGAGTGG 2286733
Query 127826 ACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 127884
| | | ||| || | ||| | ||||||| |||| || ||| ||||| |||||
Sbjct 2286732 ATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTC 2286674
Query 127885 ATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 127944
||| ||| | || ||||| || || || ||||| | || || || ||
Sbjct 2286673 GCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCGGCGAAGAAGGC 2286614
Query 127945 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAG 128001
||||| | | ||||| | |||||||| || ||||| || | |||||||||| ||
Sbjct 2286613 GAGGATGTGCGAGATGAAGTACTGTTCATCCTTGTTCAGGCGGTTGTTCCAGTCGTGAAG 2286554
Query 128002 ATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
||||| || || || | ||||| ||||||||
Sbjct 2286553 GTCCTTGGACAGGTCAATTTCCTCGGCAGTCCA 2286521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613507107973920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |