Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq8 141 1e-28
>seq8
Length=1110981
Score = 141 bits (156), Expect = 1e-28
Identities = 390/586 (67%), Gaps = 14/586 (2%)
Strand=Plus/Plus
Query 203836 CGTCTTGTCCACCGTGAACTGAAT-GGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGT 203891
|| || ||||||||| ||||| || || | |||||| ||||| | | ||| ||||
Sbjct 323461 CGCCTGGTCCACCGTAAACTGGATAGGAG----CGGCAGCAGCCTGTGTACGCAGGTAGT 323516
Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951
||||||| ||||| || ||| || ||| || | |||||| | | || | ||
Sbjct 323517 ACATGCCAGTCTTAAGACCCAGCTTCCAGCCTGCAAAATGCATGCTGGTGATCTTACCCA 323576
Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGA 204010
| ||||||| ||||||||| || || |||||| ||||| || |||||| || ||
Sbjct 323577 TGGTGGGGTCCTTCATGTGAATATTGAGGGACTGGGACTGGTCAAT-AAAGGCACCGCGG 323635
Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTC 204069
|| || ||||| | | || || ||||||||| ||||||||||||||| | | || |
Sbjct 323636 TCGGCAGCCATCTGAACAACCGTACGCTGCGAAATTTCCCACACCGTCTTGTATAGCGCC 323695
Query 204070 TCTGGTGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTC 204128
| || | | | || | || | | | | ||| |||||||||||||| || | |
Sbjct 323696 T-TGATAT-CCGTGGGAATGCTGCTGATATTTTGGATGGAGCCGTTGTCGGCAATGATCC 323753
Query 204129 TCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGT 204188
|| || | | || ||||| ||| | || || || |||| ||| ||||
Sbjct 323754 GGTTCTTCATGTTATCAGACCACAGGCCAAGGTCGACAAGGTCGCGCAGCAGCCAAGGGT 323813
Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248
||| | ||| || || |||| || || | || | | | |||| ||| | || |
Sbjct 323814 TGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGGGCT 323873
Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308
| || ||||||||| || | ||||| | || ||||| ||||||||||| || | |
Sbjct 323874 CAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAACCA 323933
Query 204309 GCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA 204368
| || |||||||| ||||||| | | | | | ||| || || |||||||| |
Sbjct 323934 GGAGAGAGTTGCGGACACCGTGCTGCTTAATCTTCTCCTTGAGGGAAGTCCAGTCCCAAA 323993
Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414
| ||||| |||| |||||||||| || || | |||||| ||
Sbjct 323994 GATCGCTGGGCGTCACATCCCACATGTCAAATTGCAGGATGCCCTG 324039
Score = 134 bits (148), Expect = 2e-26
Identities = 534/826 (65%), Gaps = 22/826 (3%)
Strand=Plus/Plus
Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982
|||| | || |||||| ||||||||| ||| ||||||||| | ||| || || |
Sbjct 324467 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTGTCCTTGTAAAGCATAAAGGGATTG 324526
Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTG 205038
|| |||| |||| | ||||||| | ||||| | |||| | | | ||
Sbjct 324527 CCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGAGCTTTGATAACCATG 324586
Query 205039 CTTC-ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGT 205097
| | ||| | ||| || ||||| ||| |||||| || |||| ||| ||||
Sbjct 324587 CGGCCACGGCCTTCCTTT-----TCGTACTTTTCGTACAGAGCTTCAAACTCATCGCCGT 324641
Query 205098 ACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCT-GATCGTCT 205156
| ||| ||| || || || | ||||| |||||||||| ||| || | || |||
Sbjct 324642 AGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCCTCGTTCTTCT 324701
Query 205157 TTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTA 205216
|| | || ||| |||||||||| ||||||||| | |||| || ||||| | |
Sbjct 324702 CA-ACACGCTTCATGAACAGGTCGCAGATCCACAGAGCCAGGAACAAGTCGCGGGCACGA 324760
Query 205217 ATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCAC 205276
| | || | |||| ||||||| || ||| || | | | ||||||||||||
Sbjct 324761 ACCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAGGAACTCAAACACGTCGGCGTGCCAG 324820
Query 205277 GGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGA 205336
|| || | | | || | || || |||| |||||| ||||||||||| || |||
Sbjct 324821 GGTTCCAGGTATATAGCAAAGGCACCGGGCCGCTTGTTGCCACCCTGGTCAACATAGCGG 324880
Query 205337 GTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTG 205396
| | | |||||| || |||| ||| || || | |||||||| ||| ||||| |||| |
Sbjct 324881 GCCGTGTTGTTGAAGACACGCAACATAGGAACAATACCGTTGGAGGTACCGTTGGTGCCG 324940
Query 205397 TTGATGGCCGAGCCTTCAGCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAAC 205454
||| ||||| || | | || |||| | | || || |||||||
Sbjct 324941 GCAATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTG--AGACCGATGCCGCCAGCCA 324998
Query 205455 ACTTGGCGATCTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCC 205513
||||| |||| || | | ||||| || || ||| ||||| | ||| ||||||
Sbjct 324999 TCTTGGAGATCATAGCACAAGTCTTG-AGGGTATCGTAAATGCCCTCAATGCTGTCGTCC 325057
Query 205514 GCCAGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAG 205572
|| |||| || ||| |||| |||| ||||| ||| ||| || |||| ||||||
Sbjct 325058 TTCA-TGTCGACTAGAAAGCATGAAGACAGCTGGGCCTGAGGGGTACCGGCGTTGAAGAG 325116
Query 205573 CGTGGGGCTGGCGTGGCTGAAGCGCTT-CTCGCTCAAACACCTGTAGGTCTCCAGCACGC 205631
||||| || ||| | ||| ||| |||| || |||| ||||| || || |
Sbjct 325117 AGTGGGAGACGCATGGGTAAAGAACTTGCTCG-ACATGAGGTTGTAAGTCTCGAGAACAC 325175
Query 205632 TCTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCT 205691
||||| || | || ||| || | ||| | | ||| | | ||| || || | ||
Sbjct 325176 GCTCCACATTGTCACCCCAAATGCCGACGGCAACACGCATAATCATGTGCTGGGGACGCT 325235
Query 205692 CCATCACCCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGT 205737
| | | | | ||| | ||| ||||| |||| | ||| |||||
Sbjct 325236 CGACAATCTTGCCGTCGAGCTTAAGCAGGTAGGAGCGCTCCAGGGT 325281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795155080726720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |