Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq8 141 1e-28 >seq8 Length=1110981 Score = 141 bits (156), Expect = 1e-28 Identities = 390/586 (67%), Gaps = 14/586 (2%) Strand=Plus/Plus Query 203836 CGTCTTGTCCACCGTGAACTGAAT-GGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGT 203891 || || ||||||||| ||||| || || | |||||| ||||| | | ||| |||| Sbjct 323461 CGCCTGGTCCACCGTAAACTGGATAGGAG----CGGCAGCAGCCTGTGTACGCAGGTAGT 323516 Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951 ||||||| ||||| || ||| || ||| || | |||||| | | || | || Sbjct 323517 ACATGCCAGTCTTAAGACCCAGCTTCCAGCCTGCAAAATGCATGCTGGTGATCTTACCCA 323576 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGA 204010 | ||||||| ||||||||| || || |||||| ||||| || |||||| || || Sbjct 323577 TGGTGGGGTCCTTCATGTGAATATTGAGGGACTGGGACTGGTCAAT-AAAGGCACCGCGG 323635 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTC 204069 || || ||||| | | || || ||||||||| ||||||||||||||| | | || | Sbjct 323636 TCGGCAGCCATCTGAACAACCGTACGCTGCGAAATTTCCCACACCGTCTTGTATAGCGCC 323695 Query 204070 TCTGGTGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTC 204128 | || | | | || | || | | | | ||| |||||||||||||| || | | Sbjct 323696 T-TGATAT-CCGTGGGAATGCTGCTGATATTTTGGATGGAGCCGTTGTCGGCAATGATCC 323753 Query 204129 TCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGT 204188 || || | | || ||||| ||| | || || || |||| ||| |||| Sbjct 323754 GGTTCTTCATGTTATCAGACCACAGGCCAAGGTCGACAAGGTCGCGCAGCAGCCAAGGGT 323813 Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 ||| | ||| || || |||| || || | || | | | |||| ||| | || | Sbjct 323814 TGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGGGCT 323873 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | || ||||||||| || | ||||| | || ||||| ||||||||||| || | | Sbjct 323874 CAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAACCA 323933 Query 204309 GCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA 204368 | || |||||||| ||||||| | | | | | ||| || || |||||||| | Sbjct 323934 GGAGAGAGTTGCGGACACCGTGCTGCTTAATCTTCTCCTTGAGGGAAGTCCAGTCCCAAA 323993 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414 | ||||| |||| |||||||||| || || | |||||| || Sbjct 323994 GATCGCTGGGCGTCACATCCCACATGTCAAATTGCAGGATGCCCTG 324039 Score = 134 bits (148), Expect = 2e-26 Identities = 534/826 (65%), Gaps = 22/826 (3%) Strand=Plus/Plus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | || |||||| ||||||||| ||| ||||||||| | ||| || || | Sbjct 324467 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTGTCCTTGTAAAGCATAAAGGGATTG 324526 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTG 205038 || |||| |||| | ||||||| | ||||| | |||| | | | || Sbjct 324527 CCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGAGCTTTGATAACCATG 324586 Query 205039 CTTC-ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGT 205097 | | ||| | ||| || ||||| ||| |||||| || |||| ||| |||| Sbjct 324587 CGGCCACGGCCTTCCTTT-----TCGTACTTTTCGTACAGAGCTTCAAACTCATCGCCGT 324641 Query 205098 ACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCT-GATCGTCT 205156 | ||| ||| || || || | ||||| |||||||||| ||| || | || ||| Sbjct 324642 AGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCCTCGTTCTTCT 324701 Query 205157 TTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTA 205216 || | || ||| |||||||||| ||||||||| | |||| || ||||| | | Sbjct 324702 CA-ACACGCTTCATGAACAGGTCGCAGATCCACAGAGCCAGGAACAAGTCGCGGGCACGA 324760 Query 205217 ATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCAC 205276 | | || | |||| ||||||| || ||| || | | | |||||||||||| Sbjct 324761 ACCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAGGAACTCAAACACGTCGGCGTGCCAG 324820 Query 205277 GGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGA 205336 || || | | | || | || || |||| |||||| ||||||||||| || ||| Sbjct 324821 GGTTCCAGGTATATAGCAAAGGCACCGGGCCGCTTGTTGCCACCCTGGTCAACATAGCGG 324880 Query 205337 GTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTG 205396 | | | |||||| || |||| ||| || || | |||||||| ||| ||||| |||| | Sbjct 324881 GCCGTGTTGTTGAAGACACGCAACATAGGAACAATACCGTTGGAGGTACCGTTGGTGCCG 324940 Query 205397 TTGATGGCCGAGCCTTCAGCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAAC 205454 ||| ||||| || | | || |||| | | || || ||||||| Sbjct 324941 GCAATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTG--AGACCGATGCCGCCAGCCA 324998 Query 205455 ACTTGGCGATCTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCC 205513 ||||| |||| || | | ||||| || || ||| ||||| | ||| |||||| Sbjct 324999 TCTTGGAGATCATAGCACAAGTCTTG-AGGGTATCGTAAATGCCCTCAATGCTGTCGTCC 325057 Query 205514 GCCAGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAG 205572 || |||| || ||| |||| |||| ||||| ||| ||| || |||| |||||| Sbjct 325058 TTCA-TGTCGACTAGAAAGCATGAAGACAGCTGGGCCTGAGGGGTACCGGCGTTGAAGAG 325116 Query 205573 CGTGGGGCTGGCGTGGCTGAAGCGCTT-CTCGCTCAAACACCTGTAGGTCTCCAGCACGC 205631 ||||| || ||| | ||| ||| |||| || |||| ||||| || || | Sbjct 325117 AGTGGGAGACGCATGGGTAAAGAACTTGCTCG-ACATGAGGTTGTAAGTCTCGAGAACAC 325175 Query 205632 TCTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCT 205691 ||||| || | || ||| || | ||| | | ||| | | ||| || || | || Sbjct 325176 GCTCCACATTGTCACCCCAAATGCCGACGGCAACACGCATAATCATGTGCTGGGGACGCT 325235 Query 205692 CCATCACCCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGT 205737 | | | | | ||| | ||| ||||| |||| | ||| ||||| Sbjct 325236 CGACAATCTTGCCGTCGAGCTTAAGCAGGTAGGAGCGCTCCAGGGT 325281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155080726720