Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq8 118 2e-21
seq10 113 1e-19
seq3 111 4e-19
>seq8
Length=1110981
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || |||||||| || |||||||| |||| ||||||||| | || ||
Sbjct 478889 CGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 478948
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| || || ||||| || |||||||||||||| ||| ||
Sbjct 478949 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCC 479008
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| |||| ||||| | | || || || |
Sbjct 479009 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCTAGG 479068
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621
|| || ||||||||||| || || || || |||
Sbjct 479069 GTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 479101
>seq10
Length=988720
Score = 113 bits (124), Expect = 1e-19
Identities = 137/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||||| || || | || || ||||||||||| || |||||||
Sbjct 887147 CCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGA 887206
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| || |||||||||||||| ||| || || ||||||||||| ||| || |
Sbjct 887207 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 887266
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| ||||| | | || || || | || |||||||||||||| || || || || |
Sbjct 887267 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 887326
Query 199620 AAATTTG 199626
|||| ||
Sbjct 887327 AAATCTG 887333
>seq3
Length=3916844
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || || ||||| ||||||||||| | ||||||||| | | || | |||||
Sbjct 1905224 AGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATCC 1905283
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||| || ||||| || |||||||||||||| || || || |||
Sbjct 1905284 TCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 1905343
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| ||||| | | || || || | ||||| |||
Sbjct 1905344 TGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATGGTC 1905403
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || || |||||
Sbjct 1905404 TTTCCAGTCAGGGTCTTGACGAAGATTTG 1905432
Score = 105 bits (116), Expect = 2e-17
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || || ||||| ||||| || |||| ||||||||| | | || | |||||
Sbjct 1905452 AGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCC 1905511
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||| || ||||| || ||||||||||||||| || || || |||
Sbjct 1905512 TCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 1905571
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| ||||| | ||||| || || | ||||| |||
Sbjct 1905572 TGGATCTTGGACTTGACATTGTCGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTC 1905631
Query 199598 TTACCCGT 199605
|| || ||
Sbjct 1905632 TTGCCGGT 1905639
Score = 95.1 bits (104), Expect = 3e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || || || ||||| || ||||| |||| ||||||||| | | |||
Sbjct 1904930 CGCAGACGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTG 1904989
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
| ||||| || |||||||| || ||||| ||||||||||||||||||||
Sbjct 1904990 CGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGG 1905039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921418740804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |