Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 378 7e-100 seq3 129 6e-25 seq8 109 5e-19 seq10 100 3e-16 >seq4 Length=2525909 Score = 378 bits (418), Expect = 7e-100 Identities = 596/846 (70%), Gaps = 17/846 (2%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || |||||||| ||||| || || || || || || | | || ||| | Sbjct 2287332 TTTTGGTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTC 2287273 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 |||||| || |||||||||| | | |||| ||| | | |||| || ||||| Sbjct 2287272 TCCATAAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTTCCGA---GGGCGACG 2287216 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | |||||| |||||||| ||||| ||| |||| ||| || | || || Sbjct 2287215 AGCAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGG 2287156 Query 132781 AGACGCACCGG-CAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 || | ||| || ||| || ||||| || || | ||| ||| |||| || ||||||| Sbjct 2287155 AGGC-CACAGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGCATCGGTGAT 2287097 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899 ||| | | || || | ||| || || | | ||| ||||| || || || Sbjct 2287096 GATCTGCTCGACTAGCTGCTTGCTGGGGCGGTTGTTGAGGTGCGAGAACAGCAGACAGGC 2287037 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 ||||||| |||| ||||||||| | || || || |||||| ||| |||| ||| || Sbjct 2287036 AAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGG 2286977 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 |||||||||||| || ||||| || |||| ||||||| |||||| ||||||| ||| Sbjct 2286976 CATGAGGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAGATGCC 2286917 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCA 133079 ||||||||| || || || |||||||||| | | || || | || ||| || |||||| Sbjct 2286916 CTCGACGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGGTCGACTCCTTGTCGGTGATCCA 2286857 Query 133080 GCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 || ||||| |||||||| || |||||| || || ||||||||||| | | Sbjct 2286856 CTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTGA--AG 2286799 Query 133140 ACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 | | || | | | | ||||| | | ||| |||||||| || ||| ||| | || Sbjct 2286798 AGGTAGGTGCGC-TGCGAGGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTACGTCTC 2286740 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 ||||| | ||||||||| ||| || |||||||| ||||| || |||||| | ||| Sbjct 2286739 GGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTG 2286680 Query 133257 CACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAA 133316 || || | |||||||||||| || || |||||||||||||||||| |||||||| Sbjct 2286679 GACCTCGCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCGGCGAA 2286620 Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTC 133373 ||||| || | |||| |||||| | | || | | ||||| ||| | |||||| Sbjct 2286619 GAAGGCGAGGATGTGCGAGATGAAGTACTGTTCATCCTTGTTCAGGCGGTTGTTCCAGTC 2286560 Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433 | | ||||||||||||||| | |||||| | ||||| || ||||||||||| || || Sbjct 2286559 GTGAAGGTCCTTGGACAGGTCAATTTCCTCGGCAGTCCAGAAGGACGCCTCGGCCTTCTT 2286500 Query 133434 GTACAT 133439 |||||| Sbjct 2286499 GTACAT 2286494 >seq3 Length=3916844 Score = 129 bits (142), Expect = 6e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || || || || || ||||| || |||| |||||| || | || | | | Sbjct 1905140 TCGTCAAGACCCTGACTGGAAAGACCATAACTCTCGAAGTCGAGTCCTCTGATACCATTG 1905081 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| ||||| ||||| || ||| | ||||| ||||| ||| Sbjct 1905080 ACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTC 1905022 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| ||||| ||||| || || | ||||| ||| |||||||||||||| ||| Sbjct 1905021 ATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTCTCAGACTACAACATCCAGAAG 1904962 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||| | || |||||| |||| |||||| || | || |||| Sbjct 1904961 GAATCTACTCTGCATCTGGTTCTGCGTCTGCGTGGAGGCC 1904922 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || |||||||| |||| |||||| | || Sbjct 1905435 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCC 1905376 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| ||||| ||||| || ||| | ||||| Sbjct 1905375 GACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 1905317 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | || ||||| ||||||||| Sbjct 1905316 GCAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAA 1905257 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||||||| | || |||||| | || || ||| || | || || Sbjct 1905256 CATTCAAAAGGAGTCCACTCTGCATCTCGTCCTCCGTCTGCGCGGTGG 1905209 >seq8 Length=1110981 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| | | |||| | Sbjct 479100 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTAGAGGTCGAGTCTTCGGACACGATC 479041 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| || Sbjct 479040 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 478982 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | || ||||| ||||| || || | |||||||| ||||||||||||||| || Sbjct 478981 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 478922 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || || |||| |||||| || | || || Sbjct 478921 GGAGTCCACCCTCCACCTGGTTCTGCGTCTGCGTGGTGG 478883 >seq10 Length=988720 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || || || ||| |||| || ||| || Sbjct 887339 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 887280 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | || || || | ||||| ||||| |||||| | ||| Sbjct 887279 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 887220 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || |||||||| |||| |||||||| |||||| Sbjct 887219 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTAC 887160 Query 38421 AACATCCAAAAGG 38433 |||||||| |||| Sbjct 887159 AACATCCAGAAGG 887147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172724974080