Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq4 378 7e-100
seq3 129 6e-25
seq8 109 5e-19
seq10 100 3e-16
>seq4
Length=2525909
Score = 378 bits (418), Expect = 7e-100
Identities = 596/846 (70%), Gaps = 17/846 (2%)
Strand=Plus/Minus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
||||| || |||||||| ||||| || || || || || || | | || ||| |
Sbjct 2287332 TTTTGGTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTC 2287273
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720
|||||| || |||||||||| | | |||| ||| | | |||| || |||||
Sbjct 2287272 TCCATAAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTTCCGA---GGGCGACG 2287216
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780
||||| | |||||| |||||||| ||||| ||| |||| ||| || | || ||
Sbjct 2287215 AGCAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGG 2287156
Query 132781 AGACGCACCGG-CAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839
|| | ||| || ||| || ||||| || || | ||| ||| |||| || |||||||
Sbjct 2287155 AGGC-CACAGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGCATCGGTGAT 2287097
Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899
||| | | || || | ||| || || | | ||| ||||| || || ||
Sbjct 2287096 GATCTGCTCGACTAGCTGCTTGCTGGGGCGGTTGTTGAGGTGCGAGAACAGCAGACAGGC 2287037
Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959
||||||| |||| ||||||||| | || || || |||||| ||| |||| ||| ||
Sbjct 2287036 AAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGG 2286977
Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019
|||||||||||| || ||||| || |||| ||||||| |||||| ||||||| |||
Sbjct 2286976 CATGAGGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAGATGCC 2286917
Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCA 133079
||||||||| || || || |||||||||| | | || || | || ||| || ||||||
Sbjct 2286916 CTCGACGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGGTCGACTCCTTGTCGGTGATCCA 2286857
Query 133080 GCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139
|| ||||| |||||||| || |||||| || || ||||||||||| | |
Sbjct 2286856 CTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTGA--AG 2286799
Query 133140 ACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196
| | || | | | | ||||| | | ||| |||||||| || ||| ||| | ||
Sbjct 2286798 AGGTAGGTGCGC-TGCGAGGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTACGTCTC 2286740
Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256
||||| | ||||||||| ||| || |||||||| ||||| || |||||| | |||
Sbjct 2286739 GGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTG 2286680
Query 133257 CACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAA 133316
|| || | |||||||||||| || || |||||||||||||||||| ||||||||
Sbjct 2286679 GACCTCGCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCGGCGAA 2286620
Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTC 133373
||||| || | |||| |||||| | | || | | ||||| ||| | ||||||
Sbjct 2286619 GAAGGCGAGGATGTGCGAGATGAAGTACTGTTCATCCTTGTTCAGGCGGTTGTTCCAGTC 2286560
Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433
| | ||||||||||||||| | |||||| | ||||| || ||||||||||| || ||
Sbjct 2286559 GTGAAGGTCCTTGGACAGGTCAATTTCCTCGGCAGTCCAGAAGGACGCCTCGGCCTTCTT 2286500
Query 133434 GTACAT 133439
||||||
Sbjct 2286499 GTACAT 2286494
>seq3
Length=3916844
Score = 129 bits (142), Expect = 6e-25
Identities = 162/220 (74%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || || || || || ||||| || |||| |||||| || | || | | |
Sbjct 1905140 TCGTCAAGACCCTGACTGGAAAGACCATAACTCTCGAAGTCGAGTCCTCTGATACCATTG 1905081
Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| |||| | || || |||| ||||| ||||| || ||| | ||||| ||||| |||
Sbjct 1905080 ACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTC 1905022
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|||| ||| ||||| ||||| || || | ||||| ||| |||||||||||||| |||
Sbjct 1905021 ATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTCTCAGACTACAACATCCAGAAG 1904962
Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||| | || |||||| |||| |||||| || | || ||||
Sbjct 1904961 GAATCTACTCTGCATCTGGTTCTGCGTCTGCGTGGAGGCC 1904922
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || || |||||||| |||| |||||| | ||
Sbjct 1905435 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCC 1905376
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || || |||| ||||| ||||| || ||| | |||||
Sbjct 1905375 GACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 1905317
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || ||||| || || | || ||||| |||||||||
Sbjct 1905316 GCAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAA 1905257
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| |||||||| | || |||||| | || || ||| || | || ||
Sbjct 1905256 CATTCAAAAGGAGTCCACTCTGCATCTCGTCCTCCGTCTGCGCGGTGG 1905209
>seq8
Length=1110981
Score = 109 bits (120), Expect = 5e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| | | |||| |
Sbjct 479100 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTAGAGGTCGAGTCTTCGGACACGATC 479041
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| ||
Sbjct 479040 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 478982
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | || ||||| ||||| || || | |||||||| ||||||||||||||| ||
Sbjct 478981 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 478922
Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| | || || || |||| |||||| || | || ||
Sbjct 478921 GGAGTCCACCCTCCACCTGGTTCTGCGTCTGCGTGGTGG 478883
>seq10
Length=988720
Score = 100 bits (110), Expect = 3e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || ||||| || || || ||| |||| || ||| ||
Sbjct 887339 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 887280
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | || || || | ||||| ||||| |||||| | |||
Sbjct 887279 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 887220
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| || || |||||||| |||| |||||||| ||||||
Sbjct 887219 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTAC 887160
Query 38421 AACATCCAAAAGG 38433
|||||||| ||||
Sbjct 887159 AACATCCAGAAGG 887147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172724974080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |