Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq8 196 6e-45 seq3 183 4e-41 >seq8 Length=1110981 Score = 196 bits (216), Expect = 6e-45 Identities = 282/398 (71%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 ||||||||||||| ||| || || || ||||| | ||||| || |||||||| | || Sbjct 883840 TCTTCACCACCCAGGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCATCCTCG 883899 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | || ||| ||||| || |||||||||||||| || || || || ||||| Sbjct 883900 ATGGTCAGCAGCGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 883959 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || | || ||||| || |||||||| || || || || || || || || || || Sbjct 883960 TCACCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTTGATG 884019 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| ||| ||||||||||||||| | | || || || || || || || || Sbjct 884020 ATACGCAGAACGTTCAGGCCAGCAATGAGACCAGAGTCCTTGGTGGCCTGACGCTGAGAG 884079 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| ||||| || | ||| |||| |||| | | || || || || Sbjct 884080 TCGTTGAAGTAGGCAGGGACAGTGATGACAGCGTTGTTGACAGTGGTGCCCAGGTAGGAC 884139 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || ||| ||| | || ||||| || |||||||| |||| | ||||| Sbjct 884140 TCGGCAGTCTCACGCATCTTGATGAGGACCATGGAGGAAATCTCCTCAGGGGTGAACTGC 884199 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || ||||| || || || || || || ||||| || Sbjct 884200 TTGGTCTCACCCTTGAACTCGACCTCGATGATGGGCTT 884237 >seq3 Length=3916844 Score = 183 bits (202), Expect = 4e-41 Identities = 356/521 (68%), Gaps = 15/521 (3%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG--AAATCAACGCCGTCGTATAAC 7300 ||| ||||| ||||| |||||||| || || | || || || | || ||| | | Sbjct 2415315 CAGCTCCTCGAAACGAGCACGGGTGATC--TGGACAGTGAAGTCCTCACCATCGAACAGG 2415372 Query 7301 GAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 | || || |||||||| || || || ||||||| || ||||| || ||||| || Sbjct 2415373 GTGTCGATCTCAATGGTGGTCTGAGCACCGGAAGATAGGGTACGCTTGGCACGCTCGCAA 2415432 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 || || || | |||||| |||||||| | | |||||||| ||| ||||| || || Sbjct 2415433 GCGGTACGGAGACGACGCAGGGCACGGGCATCACCGGAAAGATCCTTCTTGGTCTTGCGG 2415492 Query 7421 TTAAACTCTTCAGAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479 | || || | | ||| ||| | | || | | ||||| || | |||||||| ||| Sbjct 2415493 GTGAAGTCCTTCTTGCAGTAGTCCA-GCAGGTTGGTGTCGAAGTCCTGACCACCCAGGTG 2415551 Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539 ||||| || || || || ||||| |||| ||| || | ||||| | || || || Sbjct 2415552 AGTATCACCAGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTCAGCAGGGAGAC 2415611 Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT 7599 ||| || |||||||||||||| || | || || ||||| || | ||| ||| Sbjct 2415612 ATCGAAGGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTGTCAGA---CTT 2415668 Query 7600 ATCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 | || |||||||| ||||| || || || || || || || || ||||| ||| Sbjct 2415669 ACCGGCACCCAGACCGTAAGCGATGGCAGCGGCGGTAGGCTCGTTGATGATACGCAGAAC 2415728 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||||||||||||||| | | || || || || || || || || ||||| ||||| Sbjct 2415729 GTTCAGGCCAGCAATGGCACCGGCGTCCTTGGTAGCCTGGCGCTGGTTGTCGTTGAAGTA 2415788 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 ||| ||||| || | ||| || | | ||| ||||| |||| Sbjct 2415789 GGCAGGGACGGTGATGACAGCCTTCTCGACCTTCTTGCCGA 2415829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132704730080