Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8 187 3e-42 seq4 113 5e-20 >seq8 Length=1110981 Score = 187 bits (206), Expect = 3e-42 Identities = 966/1516 (64%), Gaps = 59/1516 (4%) Strand=Plus/Plus Query 109713 GTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGG 109772 |||||| || || || || ||||| || || |||| ||||| | |||||||| Sbjct 323812 GTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGGG 323871 Query 109773 TTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCAT 109832 || || ||||| ||||| || ||||| || | || || ||||||||||| || | Sbjct 323872 CTCAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAAC 323931 Query 109833 GAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATA 109892 || ||| ||| |||| ||| | | ||| | | ||| | | ||| || | Sbjct 323932 CAGGAGAGAGTTGCGGACACCGTGCTGCTTAATCTTCTCCTTGAGGGAAGTCCAGTCCCA 323991 Query 109893 ACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGC 109952 | || | || | |||| ||||||||| || ||| || | |||| | | Sbjct 323992 AAGATCGCTGG-----GCGTCAC-ATCCCACATGTCAAATTGCAGGATGCCCTGCGAGAC 324045 Query 109953 AGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTC 110012 || || |||| || | ||| | |||||| || ||| | ||| ||| ||| Sbjct 324046 CGGCGAGCCCTCATAAGTAGAGTATGTGCCCTCAGTCTGGGCAATCTCCATTGAGGCCGT 324105 Query 110013 TAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACA 110072 || || || || || || ||||||||||| || |||| | |||| ||| | | Sbjct 324106 CAGCGCAGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTGACGAGCCTCGGGAGA 324165 Query 110073 GTCGAAGGGAAGACCACAAAGA-ATAAACACATCCGCTAGACCCTGAACACCGAGACCAA 110131 || || || | | || || | || |||| || |||||||| ||||||| ||||| Sbjct 324166 CTCAAAAGGCATGCG-CAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACACCAA 324224 Query 110132 TGGGGCGATGCTTCATGTTAGAGC-GTCG-AGCAGTTTCT-ACGGGGTAAAAGTTGCGGT 110188 | ||||| || |||||| || || | || | | || ||||| ||| | Sbjct 324225 TCGGGCGGTGGCGCATGTT---GCTGTTGTAGGCCTCCGTGACAGGGTAGTGGTTCACAT 324281 Query 110189 CGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAAT 110248 | |||| || || || || || || |||| |||||| || || | | | Sbjct 324282 CAATGATGCGGTTCAGGTTGCGGACAACGACCTGTGTGACTTCATGAAGCTTTCCAAAGT 324341 Query 110249 CGAACGTTTTCGTCTCCTTATTG------ACATATTTGGGGAGAGCAATAGACGCAAGAT 110302 || || ||| | ||| ||| ||| || ||| || |||| ||| || || | Sbjct 324342 CGTAC----TCGCC--CTTGTTGTAGTCAACAAATGAGGGCAGGGCAAGAGAGGCCAGGT 324395 Query 110303 TGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAAC 110362 ||||||||| | ||| || | | ||| || | ||| || || |||| |||||| | Sbjct 324396 TGCACACAGCAACCTCATCGGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTGGAGC 324455 Query 110363 TCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCA 110422 | |||| ||||| ||||||||| || ||| |||||| ||||| || |||| Sbjct 324456 TGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTGTCCTTGTAAAGCA 324515 Query 110423 TGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCG 110481 | | || | ||||| || ||||| | || |||||||| | ||| | | || | | | Sbjct 324516 TAAAGGGATTGCCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGAG-CT 324574 Query 110482 GGGACAGT--TGCGTTAGCGA-GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAAT 110538 || | |||| || | | ||||||| |||||||| ||||| | ||||| Sbjct 324575 TTGATAACCATGCG---GCCACGGCCTTCCTTTTCGTACTTTTCGTACAGAGCTTCAAAC 324631 Query 110539 TCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTT 110598 || | ||||| |||| || || || || ||| || | || | ||| | Sbjct 324632 TCATCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCC 324691 Query 110599 CCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCA 110658 | || |||||| | ||||||||||||||| ||||||| ||| ||| | ||| Sbjct 324692 TCGTTCTTCTCAACACGCTTCATGAACAGGTCGCAGATCCACAGAGCCAGGAACAAGTCG 324751 Query 110659 CGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCC 110718 ||| |||| ||||||| | || ||||| ||| || || | || || | | || Sbjct 324752 CGGGCACGAACCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAGGAACTCAAACACGTCG 324811 Query 110719 GAGTGCCATGGTTCGAGATAGACAGCGATGGATCC------CTTACGACGACCCGCCTGG 110772 | |||||| ||||| || || | ||| | || || ||| | | || ||||| Sbjct 324812 GCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACCGGGCCGCTT--GTTG-CCACCCTGG 324868 Query 110773 TTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGA 110832 | ||||||||| || ||| |||||||| | | |||||||| ||| || | ||| | Sbjct 324869 TCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACATAGGAACAATACCGTTGGAGGTA 324928 Query 110833 CCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATA 110892 || || || || ||| ||| | ||||||||||| ||||| | | ||| || Sbjct 324929 CCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGACCGATG 324988 Query 110893 CCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAAT 110951 || || ||| ||| || |||| | ||| |||| ||| | ||||| || ||||| Sbjct 324989 CCGCCAGCCATCTTGGAGATCATAGCACAAGTCT-TGAGGGTATCGTAAATGCCCTCAAT 325047 Query 110952 CGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGC 111011 || |||| || | | ||||||||| ||||||| ||| | |||| || || || Sbjct 325048 GCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACAGCTGGGCCTGAGGGGTACCGGC 325107 Query 111012 ATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTG 111069 |||||||| || || | |||||| | | ||| |||| ||||| |||||| || Sbjct 325108 GTTGAAGAGAGTGGGAGACGCATG--GGTAAAGAACTTGCTCGACATGAGGTTGTAAGTC 325165 Query 111070 TCGAGTGCGGAGGGT--ACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATAT 111127 ||||| | | | | |||| | ||| ||| || | |||||| ||||| | ||| | Sbjct 325166 TCGAGAAC--ACGCTCCACATTGTCACCCCAAATGCCGACGGCAACACGCATAATCATGT 325223 Query 111128 ATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCT---GAAGGTAACTCTTCTCTAGGG 111184 || || |||| | ||| || || | ||| | ||||| ||| |||| Sbjct 325224 GCTGGGGACGCTCGACAATCTTGCCGTCGA---GCTTAAGCAGGTAGGAGCGCTCCAGGG 325280 Query 111185 TCTTGAGACCAAAGTA 111200 |||||| |||||||| Sbjct 325281 TCTTGAAGCCAAAGTA 325296 >seq4 Length=2525909 Score = 113 bits (124), Expect = 5e-20 Identities = 537/836 (64%), Gaps = 18/836 (2%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 ||||| ||||| | ||| |||||||| || ||||| || |||| |||||||| |||||| Sbjct 2287326 TAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATA 2287267 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 |||||||| || || ||| | ||| | | ||| | | | || || || Sbjct 2287266 AAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTTCCGAGGGCGACG-AGCAGGCG 2287208 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| ||| |||| || || | ||| || | ||||| || | ||| ||| Sbjct 2287207 GTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGGAGGCCACA 2287148 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT- 119445 || || || ||| | ||| | |||||| || | ||||| || | | ||| | Sbjct 2287147 GGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGCATCGGTGATGATCTGCTC 2287088 Query 119446 GAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCTT 119505 || ||| | || | || ||| | | | | |||| | |||||| || Sbjct 2287087 GACTAGCTGCTTGCTGGGGCG-GTTGTTGAGGTGCGAGAACAGCAGACAGGCAAAGTCGG 2287029 Query 119506 GATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTC 119565 || || || || || || ||||| ||||| || |||| || ||||||||||| | Sbjct 2287028 TGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGC 2286969 Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACAC 119625 | | || ||||| ||||||| ||| || || |||||||||||||| || Sbjct 2286968 CGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAGATGCCCTCGACGG 2286909 Query 119626 AGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC---GAACCACTTGAGA 119681 ||| || |||| || |||| || ||||||||| |||||| || ||||||||| Sbjct 2286908 CGGCAAAGGCGACCAGGCGCTGGGC-AAAGGTCGACTCCTTGTCGGTGATCCACTTGAGG 2286850 Query 119682 GCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTGCTT 119740 ||||||| |||||| || ||||| |||| || | |||||| | ||| | || | | Sbjct 2286849 GCCCAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTGAAGAGGTAGGTG 2286790 Query 119741 CTTTTC-AGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAA 119799 | | | || | ||||| || || | || || || ||||| ||||| || | Sbjct 2286789 CGCTGCGAGGGC--TCCTTGATGTAAGTGTCGATCAGCAGCGAGTACGTCTCGGAGTGGA 2286732 Query 119800 CCAT-TTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCG 119858 | | ||| || ||| || | || || |||| || |||| || || || ||| Sbjct 2286731 TGTTCTCCATCATG-ATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTCG 2286673 Query 119859 TCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCT 119918 | | ||| | | || || || || || || |||||| | |||||||| || Sbjct 2286672 CCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCGGCGAAGAAGGCG 2286613 Query 119919 AAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTCCAGTCGTCCATA 119975 | ||||| | ||||| | |||||||| | ||| || ||| |||||||||| | Sbjct 2286612 AGGATGTGCGAGATGAAGTACTGTTCATCCTTGTTCAGGCGGTTGTTCCAGTCGTGAAGG 2286553 Query 119976 TCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATA 120031 || || |||| ||| | || || || |||||| ||| || ||||| || || Sbjct 2286552 TCCTTGGACAGGTCAATTTCCTCGGCAGTCCAGAAGGACGCCTCGGCCTTCTTGTA 2286497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975911653600