Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 147 5e-30 seq10 114 3e-20 >seq3 Length=3916844 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||||||||| |||||||| ||||| |||| ||| || | ||||| || Sbjct 1905227 ACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCA 1905286 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 1905287 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 1905346 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || ||||| ||| || ||||| || || | |||||| Sbjct 1905347 ATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATGGTCTTT 1905406 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | |||||| Sbjct 1905407 CCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435 Score = 143 bits (158), Expect = 6e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||||||||| || || ||||| |||| ||| || | ||||| || Sbjct 1905455 ACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCA 1905514 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| ||||| ||||| || ||||| || Sbjct 1905515 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 1905574 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || ||||| ||| ||||||| |||||||| | ||||| Sbjct 1905575 ATCTTGGACTTGACATTGTCGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTCTTG 1905634 Query 195112 CCTGTCA 195118 || |||| Sbjct 1905635 CCGGTCA 1905641 >seq10 Length=988720 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | || || || ||||||||||| |||||||| Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || |||||||| || ||||| ||||| || |||||| || || Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 || |||||||| || || || ||||||| |||||| || || | || || ||||| Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 887329 ATCTGCAT 887336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481429417204