Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq10 93.3 3e-14 seq8 84.2 1e-11 >seq3 Length=3916844 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| |||||| | || |||| || ||||| ||||| ||||| Sbjct 1905245 TCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAG 1905304 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 1905305 ATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 1905364 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || |||| || ||||| ||||| || || ||||| || Sbjct 1905365 TCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACG 1905424 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 1905425 AAGATTTGCATA 1905436 Score = 82.4 bits (90), Expect = 5e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | || |||| || ||||| || || || || Sbjct 1904959 TTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAA 1905018 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 1905019 AATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTT 1905078 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| || ||| || |||| |||||||| ||||| || || ||||| || Sbjct 1905079 GTCAATGGTATCAGAGGACTCGACTTCGAGAGTTATGGTCTTTCCAGTCAGGGTCTTGAC 1905138 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| |||||| | || |||| || ||||| ||||| ||||| Sbjct 1905473 TCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAG 1905532 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || |||||||| | || | ||||||||||| Sbjct 1905533 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 1905570 >seq10 Length=988720 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || ||| | || | || |||||||| || || || || || Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| |||||| ||||| || | Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT--T 887264 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || || |||||| |||| ||| || || || ||||| || ||||| || Sbjct 887265 GTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 887324 Query 34970 AAAGATCTGCATATT 34984 || |||||||| || Sbjct 887325 GAAAATCTGCATCTT 887339 >seq8 Length=1110981 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| Sbjct 478897 CAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 478956 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 478957 CTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 479016 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| | |||| || | ||| || || | ||| ||||| Sbjct 479017 CTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCTAGGGTAATGGT 479076 Query 34949 TTTTCCCGTGAGAGTCTTCACAAA 34972 || ||||| || ||||| || || Sbjct 479077 CTTACCCGTCAGGGTCTTGACGAA 479100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633552522336