Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 8e-16
>seq2
Length=3936381
Score = 98.7 bits (108), Expect = 8e-16
Identities = 285/442 (64%), Gaps = 45/442 (10%)
Strand=Plus/Plus
Query 29882 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 29941
|||| ||||||| || || |||||||| ||| ||||| |||||||| || || ||||
Sbjct 849978 GAGCAATCATGTGTGTAAGCAGAGAGTACGAGGCAATGTTGAAGGGTACACCCAGGCCCA 850037
Query 29942 TGTCCCCCGACCTCTGGTAGAGCTGACA---CGA---------GAGCTCTCCGTCGCTC- 29988
|||| | ||||| ||||||| ||| || | | | ||| | | |||| |
Sbjct 850038 TGTCGCACGACCGTTGGTAGAACTGGCAGTGCAAATGGCCTTTGGGCTTTTCCTCGCCCT 850097
Query 29989 --------------------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAG 30025
||||| ||||| | |||| || ||||| || || |
Sbjct 850098 CCTTTGCGCCGGGATATGAAACGTAGAACTGGGCAAACATA---TGACACGGCGGCAGGG 850154
Query 30026 CCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30085
|||| | |||| ||||||||| |||| || || ||||||| || | || |
Sbjct 850155 CCATCTTCTTTAGGTCTGCGGGGTTCCACGCGCTCATTATAATGCGCCGATCGTACGGAT 850214
Query 30086 TGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 30142
|| || ||| || || || || | ||||| || || || | |||| |||||
Sbjct 850215 TGGTCTTGAGCTTGTGGATGACCTCGGCT---AGCTGGTCGACACCTTTGCCCGTGTAGT 850271
Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202
| | | ||| |||||| || || ||||| | ||| ||||| |||||||| || |
Sbjct 850272 CCGTTTTGGCGTCTACGTACTCGGCGCCAAAATGGCGCCATTGGAAGCCGTACACGGGGC 850331
Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262
|||||||||| | || | ||| ||| |||| |||| | ||| || | || ||||
Sbjct 850332 CCAGGTCTCCGACCTCGCGGTGGCCGAGGCCCACGCTGTCGAGAAACTCCCGCGAGCCGT 850391
Query 30263 TGGCGTCCCAGATCTTTACCCC 30284
|| | ||||||||||| || ||
Sbjct 850392 TGCCATCCCAGATCTTGACGCC 850413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617540239676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |