Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 8e-16 >seq2 Length=3936381 Score = 98.7 bits (108), Expect = 8e-16 Identities = 285/442 (64%), Gaps = 45/442 (10%) Strand=Plus/Plus Query 29882 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 29941 |||| ||||||| || || |||||||| ||| ||||| |||||||| || || |||| Sbjct 849978 GAGCAATCATGTGTGTAAGCAGAGAGTACGAGGCAATGTTGAAGGGTACACCCAGGCCCA 850037 Query 29942 TGTCCCCCGACCTCTGGTAGAGCTGACA---CGA---------GAGCTCTCCGTCGCTC- 29988 |||| | ||||| ||||||| ||| || | | | ||| | | |||| | Sbjct 850038 TGTCGCACGACCGTTGGTAGAACTGGCAGTGCAAATGGCCTTTGGGCTTTTCCTCGCCCT 850097 Query 29989 --------------------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAG 30025 ||||| ||||| | |||| || ||||| || || | Sbjct 850098 CCTTTGCGCCGGGATATGAAACGTAGAACTGGGCAAACATA---TGACACGGCGGCAGGG 850154 Query 30026 CCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30085 |||| | |||| ||||||||| |||| || || ||||||| || | || | Sbjct 850155 CCATCTTCTTTAGGTCTGCGGGGTTCCACGCGCTCATTATAATGCGCCGATCGTACGGAT 850214 Query 30086 TGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 30142 || || ||| || || || || | ||||| || || || | |||| ||||| Sbjct 850215 TGGTCTTGAGCTTGTGGATGACCTCGGCT---AGCTGGTCGACACCTTTGCCCGTGTAGT 850271 Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202 | | | ||| |||||| || || ||||| | ||| ||||| |||||||| || | Sbjct 850272 CCGTTTTGGCGTCTACGTACTCGGCGCCAAAATGGCGCCATTGGAAGCCGTACACGGGGC 850331 Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262 |||||||||| | || | ||| ||| |||| |||| | ||| || | || |||| Sbjct 850332 CCAGGTCTCCGACCTCGCGGTGGCCGAGGCCCACGCTGTCGAGAAACTCCCGCGAGCCGT 850391 Query 30263 TGGCGTCCCAGATCTTTACCCC 30284 || | ||||||||||| || || Sbjct 850392 TGCCATCCCAGATCTTGACGCC 850413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617540239676