Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq10 113 3e-20 seq7 86.0 5e-12 >seq10 Length=988720 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| ||||| || | || |||| |||| ||||||||| || || ||| Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 || ||||| || |||| ||||| |||||||||||| |||||| || ||| | Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | || || || | ||| ||||| | |||||||| || ||||| | || || || ||| Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328 Query 48759 ATCTGCATCGTG 48770 ||||||||| || Sbjct 887329 ATCTGCATCTTG 887340 >seq7 Length=1169112 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 9094 TGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACC 9153 || ||||| | ||| |||| || || | ||||| | |||| || |||||||| | | Sbjct 395805 TGGGCAATGCGGTCGCCCTCCTTGACCTCGAAGTCGGCGTCGTGGTGGTTGAACAGGAGC 395864 Query 9154 ACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGC 9213 || || | || | ||| || | ||||| |||||||| || ||||||||||||| Sbjct 395865 ACCTTGACTTCGCCGCGGTAGTCGGCGTCGATGACACCAGCGCCGGTGTCGATGAAGTGC 395924 Query 9214 TTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGT 9250 ||| | || || || |||||||| ||||| || |||| Sbjct 395925 TTGGCGGCAAGGCCGGAGCGGGGAGCGATGCGGCCGT 395961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937544287876