Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq8 322 9e-83 seq4 255 1e-62 >seq8 Length=1110981 Score = 322 bits (356), Expect = 9e-83 Identities = 998/1524 (65%), Gaps = 63/1524 (4%) Strand=Plus/Plus Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 ||||||||| | |||||| || || | || || | | |||||||| ||| |||||||| Sbjct 323809 AGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTA 323868 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 |||||| | || ||||||||| ||||| ||||| | || ||||| ||||||||||| || Sbjct 323869 GGGCTCAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGC 323928 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGA-AGCTCTGCCCAGT 213084 ||||||||| ||| | || ||||||| || | | || || | ||||| Sbjct 323929 AACCAGGAGAGAGTTGCGGACACCGTGCT-GCTTAATCTTCTCCTTGAGGGAAGTCCAGT 323987 Query 213085 CCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT 213144 |||| || || | | |||| | |||||||||||| |||| |||||| | Sbjct 323988 CCCAA---------AGATCGCTGGGCGTCACATCCCACATGTCAAATTGCAGGATGCCCT 324038 Query 213145 TGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGG 213204 || || ||||| |||| ||||| | ||| | || ||| | ||| | Sbjct 324039 GCGAGACCGGCGAGCCCTCATAAGTAGAGTATGTGCCCTCAGTCTGGGCAATCTCCATTG 324098 Query 213205 ACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCT 213264 | ||| ||| ||||||| ||||||||| ||||| |||| | |||| |||| |||| Sbjct 324099 AGGCCGTCAGCGCAGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTGACGAGCCT 324158 Query 213265 CTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 | || ||| || ||||| || |||| |||||||||| |||||||| |||| Sbjct 324159 CGGGAGACTCAAAAGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGA 324218 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 || || || | ||| | || ||| ||| || |||| | ||||| ||| Sbjct 324219 CACCAATCGGGCGGTGGCGCATGTTGCTGTTGTAGGCCTCCGTGACAGGGTAGTGGTTCA 324278 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTA-CTCG 213443 || ||||| ||| ||||||||| | || | ||||| | || | | || Sbjct 324279 CATCAATGATGCGGTTCAGGTTGCGGACAACGACCTGTGTGACTT----CATGAAGCTTT 324334 Query 213444 TGATTGAACACGTAGCCCCC------GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCC 213497 | || |||| | || || | ||||| |||||||| | |||| Sbjct 324335 CCA---AAGTCGTACTCGCCCTTGTTGTAGTCAACAAATGAGGGCAGGGCAAGAGAGGCC 324391 Query 213498 AGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTG 213557 |||||||| || || ||||| | | | | |||||| || ||||| |||||||||||| Sbjct 324392 AGGTTGCACACAGCAACCTCATCGGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTG 324451 Query 213558 CTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTGTA 213616 || || ||||| |||||||||| ||||| ||| ||| | |||| |||||||| Sbjct 324452 GAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGCTGTCCTTGTA 324510 Query 213617 GAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCT 213676 ||||| |||| || ||||| ||||| | |||| || | ||| || | | Sbjct 324511 AAGCATAAAGGGATTGCCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTG 324570 Query 213677 GGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCT---CGTACTGTTCGTAGAGCTC 213733 || |||| ||| | | || ||| | | ||| |||||| |||||| || | Sbjct 324571 AGCTTTGATAACCATGCGGCCA----CGGCCTT--CCTTTTCGTACTTTTCGTACAGAGC 324624 Query 213734 GTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGC 213792 | || || | ||| || | | | |||| || || || ||| ||||| || Sbjct 324625 TTCAAACTCATCGCCGTAGCAGTCAG-CCAGGCCGGGGCACTCGTTGGGGCACATCAGAG 324683 Query 213793 TCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTG 213851 |||||||| ||| | |||| || | || |||||||||||| || |||||| || | Sbjct 324684 TCCAGTCCTCGTTCTTCTCA-ACACGCTTCATGAACAGGTCGCAGATCCACAGAGCCAGG 324742 Query 213852 AACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCA 213911 |||| ||| | || | ||| ||| |||| ||| |||||||| || || || ||| Sbjct 324743 AACAAGTCGCGGGCACGAACCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAGGAACTCA 324802 Query 213912 AAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCG 213968 || | ||| |||||||| || |||| ||| || |||||||| || |||| | ||||| Sbjct 324803 AACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACCGGGCCGCTTGTTGCCA 324862 Query 213969 CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTG 214028 |||||||| || | |||| ||||||||| |||| | || || | |||||| Sbjct 324863 CCCTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACATAGGAACAATACCGTTG 324922 Query 214029 GACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGC 214088 || |||||||| || || || || ||||| | ||| | | | | | | ||| Sbjct 324923 GAGGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGA 324982 Query 214089 CCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCG 214148 || ||||| || || |||||||||||| || || | | | || || ||||| Sbjct 324983 CCGATGCCGCCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGGGTATCGTAAATGCCC 325042 Query 214149 GCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GACGA 214207 | |||||||| || | | || | | ||||| || |||| ||||||| | | Sbjct 325043 TCAATGCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACAGCT-GGGCCTGAGGGGT 325101 Query 214208 GCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTA 214267 || | |||||| || ||||| |||||| | | |||||| | || | ||| |||| Sbjct 325102 ACCGGCGTTGAAGAGAGTGGGAGACGCATGGGTAAAGAACTTGCTCGACATGAGGTTGTA 325161 Query 214268 GGTCTCCAGGACTGAGGGGATGTCGTGCTTGT----GGATCTGTAGAGCGCA--CCTCAT 214321 ||||| || || | | || |||| | || || ||| | ||| Sbjct 325162 AGTCTCGAGAAC--ACG----CTCCACATTGTCACCCCAAATGCCGACGGCAACACGCAT 325215 Query 214322 CAGCATGTGCTGGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCG 214378 | |||||||||||| | || | || || | | | ||| |||||||||||||| Sbjct 325216 AATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAG---CTTAAGCAGGTAGGAGCG 325272 Query 214379 CTCCAGAGTCTTGAACCCAAAGTA 214402 |||||| |||||||| |||||||| Sbjct 325273 CTCCAGGGTCTTGAAGCCAAAGTA 325296 >seq4 Length=2525909 Score = 255 bits (282), Expect = 1e-62 Identities = 572/850 (67%), Gaps = 28/850 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| ||||| | ||||| |||||||| ||||| || | | ||||||||||||| Sbjct 2287329 TGGTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCC 2287270 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC--AGGCCCATCTGTTCC 47953 || ||| |||||||||| | | || ||| ||| || ||| | | | Sbjct 2287269 ATAAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTTCCGAGGGCGA------CG 2287216 Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 |||||| | || |||||| |||| ||||| | ||||||| | ||||||||| | | Sbjct 2287215 AGCAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGG 2287156 Query 48014 AGGGACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| ||| ||||| |||| || || ||||||||||| || || || || | Sbjct 2287155 AGGC-CACAGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGCATCGGTGAT 2287097 Query 48073 AATCTGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCAT 48129 ||||||| || | || ||| || | |||||| |||||| | | |||| Sbjct 2287096 GATCTGCTCGACTAGCTGCTTGCTGGGGCGGTTGTTG---AGGTGCGAGA---ACAGCAG 2287043 Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||||||||||| |||||| ||| ||||| || ||| ||| ||||||||||| || Sbjct 2287042 ACAGGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAG 2286983 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 |||||||||| || | || |||||||| || | ||||||| ||| |||||||| Sbjct 2286982 GCCAGGCATGAGGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAA 2286923 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||||||||| || || || || ||| || | || | || | | | |||||| | Sbjct 2286922 GATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGGTCGACTCCTTGTCGGT 2286863 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 |||||| || |||||||| ||||| |||||| || || || || ||||| Sbjct 2286862 GATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTT 2286803 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 |||||| | ||| || | ||| | || || || |||| | |||| | Sbjct 2286802 GAAGAGGTAGGTGCGCTGCGAGGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTACGT 2286743 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||| ||||||||| | |||||| | Sbjct 2286742 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGAT 2286683 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| || || |||||| | ||| | || ||||| ||||| || || || || || || Sbjct 2286682 CTGGACCTCGCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCGGC 2286623 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTCC 48605 |||||||| |||| || | ||| | | || | | | | || || |||| Sbjct 2286622 GAAGAAGGCGAGGATGTGCGAGATGAAGTACTGTTCATCCTTGTTCAG-GCGGTTGTTCC 2286564 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | || | ||| ||| |||||| | ||| || |||||||||||||||| || | Sbjct 2286563 AGTCGTGAAGGTCCTTGGACAGGTCAATTTCCTCGGCAGTCCAGAAGGACGCCTCGGCCT 2286504 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 2286503 TCTTGTACAT 2286494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532660270080