Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq8 262 7e-65
seq4 212 1e-49
>seq8
Length=1110981
Score = 262 bits (290), Expect = 7e-65
Identities = 841/1284 (65%), Gaps = 57/1284 (4%)
Strand=Plus/Plus
Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGG 221474
|||||| ||||||||||||||||||||||| ||| |||||| || || | |||||||
Sbjct 324103 CGTCAGCGCAGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAG-CTGACGAGCCTCGG 324161
Query 221475 GAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534
|||| || ||||| ||||| | | ||| | || ||||| ||||| || |||| ||
Sbjct 324162 GAGACTCAAAAGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACAC 324221
Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594
| || || | ||| | | ||||| | || || | || || || ||| || |
Sbjct 324222 CAATCGGGCGGTGGCGCATGTTGCTGTTGTAGGCCTCCGTGACAGGGTAGTGGTTCACAT 324281
Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC-TGGTGA 221653
| || | || ||||||| || ||| ||| |||| || | |||| || |
Sbjct 324282 CAATGA------TGCGGTTCAGGTTGCGGAC---AACGACCTGTGTGA-CTTCATGAAGC 324331
Query 221654 TTG---AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710
|| || | ||||||| || || | || ||||| | | |||||||
Sbjct 324332 TTTCCAAAGTCGTACTCGCCCTTGTTGTAG------TCAACAAATGAGGGCAGGGCAAGA 324385
Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA---TACTGTATGATCTCTGTA 221767
||||||||| ||||| || ||||| || | || | |||| || ||||| ||
Sbjct 324386 GAGGCCAGGTTGCACACAGCAACCTCATC---GGGGGCACAGTACTCGATAATCTCAGTG 324442
Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC- 221826
|| |||||| || ||||| ||||||| || || || |||||| ||| ||||
Sbjct 324443 CACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGCT 324501
Query 221827 GTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886
||||||||| |||||||||||| ||||||||| ||| ||| ||||||| || |||
Sbjct 324502 GTCCTTGTAAAGCATAAAGGGATTGCCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACCA 324561
Query 221887 GAGTTCTCTG-GC---GCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCG- 221941
|| | |||| || | | ||| | | || || | || |||||| |||
Sbjct 324562 CAGCT-TCTGAGCTTTGATAACCATGCGGCC-ACGGC--CTTC---CTTTTCGTACTTTT 324614
Query 221942 -GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGG 222000
||| ||||| | |||||| || ||||| || ||||||| || ||| | |||
Sbjct 324615 CGTACAGAGCTT--CAAACTCATCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGG 324672
Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060
||||||||| |||||| || ||| | | || | || |||||| ||||| ||||||
Sbjct 324673 GCACATCAGAGTCCAGTCCTCGTTCTTCTCAACACGCTTCATGAACAGGTCGCAGATCCA 324732
Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120
||| ||| | || | || | || || ||| ||| || | ||| || | ||| ||
Sbjct 324733 CAGAGCCAGGAACAAGTCGCGGGCACGAACCTCTTCCTTTCCATGGTTCTTGCGCAGGTC 324792
Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180
| |||||||| | ||| |||||||| || ||||| || | || | || ||||| ||
Sbjct 324793 AAGGAACTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACCGGGCCG 324852
Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTAC 222240
||||||||||||||| || || | || |||||||| || | | || ||
Sbjct 324853 CTTGTTGCCACCCTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACATAGGAAC 324912
Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACT 222300
| |||||||| |||||||||||| |||||| | || ||| | | |
Sbjct 324913 AATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATG----C 324968
Query 222301 GGCAGAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356
|| ||| | ||||| || || || || |||||||| || || ||||||| |
Sbjct 324969 GGTGGACGTTGAGACCGATGCCGCCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGGG 325028
Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416
| || |||||||| || ||| ||||| | || | ||||| || || |||| ||
Sbjct 325029 TATCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACAGCT 325088
Query 222417 GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG 222476
| | | | || || |||||| || || |||||| || || |||||| | || |
Sbjct 325089 GGGCCTGAGGGGTACCGGCGTTGAAGAGAGTGGGAGACGCATGGGTAAAGAACTTGCTCG 325148
Query 222477 ACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGC 222536
|||| || | ||| ||||| | || | | | ||||| || ||| | |||
Sbjct 325149 ACATGAGGTTGTAAGTCTCGAGAACACGCTCCACATTGTCACCCCAAATGCCGACGGCAA 325208
Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594
| ||| ||||| |||||| | ||| ||| || | ||||| ||||||||
Sbjct 325209 CACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAGCT--TAAGCAGGTA 325266
Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCAC 222654
|| ||||| |||||||| |||||||| | | || ||||| | | ||| || |
Sbjct 325267 GGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAAT 325326
Query 222655 GGCGGCGTCCAGCTCCGACTTGTG 222678
||| | |||||||| ||||||
Sbjct 325327 GGCAGAATCCAGCTCTTCCTTGTG 325350
Score = 104 bits (114), Expect = 4e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | |||||| | ||| |||||| | ||
Sbjct 323812 GTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGGG 323871
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|| | || ||||||||| ||||||||||| | ||| ||||| |||||||||||||| ||
Sbjct 323872 CTCAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAAC 323931
Query 221236 CAGCAGACTGTTGCG 221250
||| ||| ||||||
Sbjct 323932 CAGGAGAGAGTTGCG 323946
>seq4
Length=2525909
Score = 212 bits (234), Expect = 1e-49
Identities = 571/865 (66%), Gaps = 38/865 (4%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | || |||||| ||||| || ||||| |||
Sbjct 2286485 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAAATTGACCTG 2286544
Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
|||||||| | ||| |||| || || || ||| || || ||| | || ||
Sbjct 2286545 TCCAAGGACCTTCACGACTGGAACAACCGC-CTGAACAAGGATGAACAGTACTTCATCTC 2286603
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
| || | | || ||||| || || || || || || || |||||||| || |||| |
Sbjct 2286604 GCACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAACCTCGTCGAGCG 2286663
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
||| || | || || ||| | |||||| || |||||||| |||||||| ||
Sbjct 2286664 TTTCTCCGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 2286723
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--C 25767
|| || | ||||| ||| ||| | ||| ||||| || ||||| | || |
Sbjct 2286724 GGAGAACATCCACTCCGAGACGTACTC---GCTGCTGATCGACACTTACATCAAGGAGCC 2286780
Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827
|||| | | | || || |||||||| ||| || ||||| | |||
Sbjct 2286781 CTCGCAGCGCACCTAC--CTCTTCAACGCCATCGATACCATCCCGTGCATCCGCCGCAAG 2286838
Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887
|| |||||| | |||||||||| | | || | || |||| | |||| |||||
Sbjct 2286839 GCCGACTGGGCCCTCAAGTGGATCACCGACAAGGAGTCGACCTTTGCCCAGCGCCTGGTC 2286898
Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT- 25946
|||||||| || || ||||||||||| ||| || | || || |||||||||||||
Sbjct 2286899 GCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTTTCGCCTCCATCTTCTGGCTG 2286958
Query 25947 --CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003
||||| | || | |||||| || ||| ||| ||||||||||| ||| | ||
Sbjct 2286959 CGCAAGC----GCGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGA 2287014
Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA--A 26061
|||||| || |||| || |||||||| ||||| | | || ||| ||| ||||
Sbjct 2287015 CGAGGGCCTGCACACCGACTTTGCCTGTCTGCTGTTCTCG---CAC---CTCAACAACCG 2287068
Query 26062 CCTTCTCAAG-AGACCGTCTA-CAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGT 26119
|| |||| || ||| | ||| ||||||| || ||||| | || ||||||||||
Sbjct 2287069 CCCCAGCAAGCAGCTAGTCGAGCAG-ATCATCACCGATGCTGTCGTCATTGAGAAGGAGT 2287127
Query 26120 TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAAT 26179
| | | ||||||||| | ||||||| || |
Sbjct 2287128 TCCTGACCGAGGCCCTGCCCTGTGGCCTCCTCGGCATGAACGCCGACCTCATGAAGCAGT 2287187
Query 26180 ACATTGAGTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACAG 26237
||||||||| || ||||||| ||||| || ||| || ||| || | ||||| |
Sbjct 2287188 ACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCC--CTCGGAAACGAAAAGGTCTACCG 2287245
Query 26238 TACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTT 26297
| | ||||| || ||||||||||| ||||| ||| | | || ||||||||||||||
Sbjct 2287246 CGCCACCAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTT 2287305
Query 26298 TGAAAAGAGGGTCGGCGACTATCAA 26322
|| ||| | || |||||||| |||
Sbjct 2287306 CGAGAAGCGCGTGGGCGACTACCAA 2287330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844660673280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |