Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq8 262 7e-65 seq4 212 1e-49 >seq8 Length=1110981 Score = 262 bits (290), Expect = 7e-65 Identities = 841/1284 (65%), Gaps = 57/1284 (4%) Strand=Plus/Plus Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGG 221474 |||||| ||||||||||||||||||||||| ||| |||||| || || | ||||||| Sbjct 324103 CGTCAGCGCAGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAG-CTGACGAGCCTCGG 324161 Query 221475 GAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 |||| || ||||| ||||| | | ||| | || ||||| ||||| || |||| || Sbjct 324162 GAGACTCAAAAGGCATGCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACAC 324221 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 | || || | ||| | | ||||| | || || | || || || ||| || | Sbjct 324222 CAATCGGGCGGTGGCGCATGTTGCTGTTGTAGGCCTCCGTGACAGGGTAGTGGTTCACAT 324281 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC-TGGTGA 221653 | || | || ||||||| || ||| ||| |||| || | |||| || | Sbjct 324282 CAATGA------TGCGGTTCAGGTTGCGGAC---AACGACCTGTGTGA-CTTCATGAAGC 324331 Query 221654 TTG---AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710 || || | ||||||| || || | || ||||| | | ||||||| Sbjct 324332 TTTCCAAAGTCGTACTCGCCCTTGTTGTAG------TCAACAAATGAGGGCAGGGCAAGA 324385 Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA---TACTGTATGATCTCTGTA 221767 ||||||||| ||||| || ||||| || | || | |||| || ||||| || Sbjct 324386 GAGGCCAGGTTGCACACAGCAACCTCATC---GGGGGCACAGTACTCGATAATCTCAGTG 324442 Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC- 221826 || |||||| || ||||| ||||||| || || || |||||| ||| |||| Sbjct 324443 CACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGCT 324501 Query 221827 GTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886 ||||||||| |||||||||||| ||||||||| ||| ||| ||||||| || ||| Sbjct 324502 GTCCTTGTAAAGCATAAAGGGATTGCCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACCA 324561 Query 221887 GAGTTCTCTG-GC---GCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCG- 221941 || | |||| || | | ||| | | || || | || |||||| ||| Sbjct 324562 CAGCT-TCTGAGCTTTGATAACCATGCGGCC-ACGGC--CTTC---CTTTTCGTACTTTT 324614 Query 221942 -GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGG 222000 ||| ||||| | |||||| || ||||| || ||||||| || ||| | ||| Sbjct 324615 CGTACAGAGCTT--CAAACTCATCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGG 324672 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 ||||||||| |||||| || ||| | | || | || |||||| ||||| |||||| Sbjct 324673 GCACATCAGAGTCCAGTCCTCGTTCTTCTCAACACGCTTCATGAACAGGTCGCAGATCCA 324732 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120 ||| ||| | || | || | || || ||| ||| || | ||| || | ||| || Sbjct 324733 CAGAGCCAGGAACAAGTCGCGGGCACGAACCTCTTCCTTTCCATGGTTCTTGCGCAGGTC 324792 Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180 | |||||||| | ||| |||||||| || ||||| || | || | || ||||| || Sbjct 324793 AAGGAACTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACCGGGCCG 324852 Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTAC 222240 ||||||||||||||| || || | || |||||||| || | | || || Sbjct 324853 CTTGTTGCCACCCTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACATAGGAAC 324912 Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACT 222300 | |||||||| |||||||||||| |||||| | || ||| | | | Sbjct 324913 AATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATG----C 324968 Query 222301 GGCAGAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356 || ||| | ||||| || || || || |||||||| || || ||||||| | Sbjct 324969 GGTGGACGTTGAGACCGATGCCGCCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGGG 325028 Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416 | || |||||||| || ||| ||||| | || | ||||| || || |||| || Sbjct 325029 TATCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACAGCT 325088 Query 222417 GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG 222476 | | | | || || |||||| || || |||||| || || |||||| | || | Sbjct 325089 GGGCCTGAGGGGTACCGGCGTTGAAGAGAGTGGGAGACGCATGGGTAAAGAACTTGCTCG 325148 Query 222477 ACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGC 222536 |||| || | ||| ||||| | || | | | ||||| || ||| | ||| Sbjct 325149 ACATGAGGTTGTAAGTCTCGAGAACACGCTCCACATTGTCACCCCAAATGCCGACGGCAA 325208 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594 | ||| ||||| |||||| | ||| ||| || | ||||| |||||||| Sbjct 325209 CACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAGCT--TAAGCAGGTA 325266 Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCAC 222654 || ||||| |||||||| |||||||| | | || ||||| | | ||| || | Sbjct 325267 GGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAAT 325326 Query 222655 GGCGGCGTCCAGCTCCGACTTGTG 222678 ||| | |||||||| |||||| Sbjct 325327 GGCAGAATCCAGCTCTTCCTTGTG 325350 Score = 104 bits (114), Expect = 4e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| |||||| | || Sbjct 323812 GTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGGG 323871 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || ||||||||| ||||||||||| | ||| ||||| |||||||||||||| || Sbjct 323872 CTCAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAAC 323931 Query 221236 CAGCAGACTGTTGCG 221250 ||| ||| |||||| Sbjct 323932 CAGGAGAGAGTTGCG 323946 >seq4 Length=2525909 Score = 212 bits (234), Expect = 1e-49 Identities = 571/865 (66%), Gaps = 38/865 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||| ||||| || ||||| ||| Sbjct 2286485 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAAATTGACCTG 2286544 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 |||||||| | ||| |||| || || || ||| || || ||| | || || Sbjct 2286545 TCCAAGGACCTTCACGACTGGAACAACCGC-CTGAACAAGGATGAACAGTACTTCATCTC 2286603 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | || | | || ||||| || || || || || || || |||||||| || |||| | Sbjct 2286604 GCACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAACCTCGTCGAGCG 2286663 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| || | || || ||| | |||||| || |||||||| |||||||| || Sbjct 2286664 TTTCTCCGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 2286723 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--C 25767 || || | ||||| ||| ||| | ||| ||||| || ||||| | || | Sbjct 2286724 GGAGAACATCCACTCCGAGACGTACTC---GCTGCTGATCGACACTTACATCAAGGAGCC 2286780 Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 |||| | | | || || |||||||| ||| || ||||| | ||| Sbjct 2286781 CTCGCAGCGCACCTAC--CTCTTCAACGCCATCGATACCATCCCGTGCATCCGCCGCAAG 2286838 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 || |||||| | |||||||||| | | || | || |||| | |||| ||||| Sbjct 2286839 GCCGACTGGGCCCTCAAGTGGATCACCGACAAGGAGTCGACCTTTGCCCAGCGCCTGGTC 2286898 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT- 25946 |||||||| || || ||||||||||| ||| || | || || ||||||||||||| Sbjct 2286899 GCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTTTCGCCTCCATCTTCTGGCTG 2286958 Query 25947 --CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 ||||| | || | |||||| || ||| ||| ||||||||||| ||| | || Sbjct 2286959 CGCAAGC----GCGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGA 2287014 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA--A 26061 |||||| || |||| || |||||||| ||||| | | || ||| ||| |||| Sbjct 2287015 CGAGGGCCTGCACACCGACTTTGCCTGTCTGCTGTTCTCG---CAC---CTCAACAACCG 2287068 Query 26062 CCTTCTCAAG-AGACCGTCTA-CAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGT 26119 || |||| || ||| | ||| ||||||| || ||||| | || |||||||||| Sbjct 2287069 CCCCAGCAAGCAGCTAGTCGAGCAG-ATCATCACCGATGCTGTCGTCATTGAGAAGGAGT 2287127 Query 26120 TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAAT 26179 | | | ||||||||| | ||||||| || | Sbjct 2287128 TCCTGACCGAGGCCCTGCCCTGTGGCCTCCTCGGCATGAACGCCGACCTCATGAAGCAGT 2287187 Query 26180 ACATTGAGTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACAG 26237 ||||||||| || ||||||| ||||| || ||| || ||| || | ||||| | Sbjct 2287188 ACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCC--CTCGGAAACGAAAAGGTCTACCG 2287245 Query 26238 TACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTT 26297 | | ||||| || ||||||||||| ||||| ||| | | || |||||||||||||| Sbjct 2287246 CGCCACCAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTT 2287305 Query 26298 TGAAAAGAGGGTCGGCGACTATCAA 26322 || ||| | || |||||||| ||| Sbjct 2287306 CGAGAAGCGCGTGGGCGACTACCAA 2287330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844660673280