Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3 127 6e-24
seq8 111 5e-19
seq2 84.2 6e-11
>seq3
Length=3916844
Score = 127 bits (140), Expect = 6e-24
Identities = 189/264 (72%), Gaps = 8/264 (3%)
Strand=Plus/Minus
Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643
|||| |||||||||||||| ||||||||| | ||||| ||||| || || || |||
Sbjct 2391589 TTGACCAAACGACGCTGAATGTAACCAGTTTCGGCAGTTTTCACAGCAGTGTCGATAAGA 2391530
Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAA 302702
|| |||||||| |||| ||||||||||| | ||| | || || || || | || |
Sbjct 2391529 CCCTCACGACCAGCCATGGCATGGAAGAAGAACTC-GCTGGGGGTCAGGCCACGAAGGTA 2391471
Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762
||| |||| || || ||||| || ||||| || | || |||||| || || |||||
Sbjct 2391470 AGAGTTCTCGACAAAGCCACGGGCTTCGGGGGAGTAATCATCCTTGGTGAAATGAGGCAG 2391411
Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCAG 302819
|| | || || | || | || |||||||| || |||||| | ||||| | ||||
Sbjct 2391410 AGTACGGTACTTGAAACCAAAGGGAATACGCTTGCCTTCAACGATTTGCTGACCGACCAG 2391351
Query 302820 GCACGAAATCATCTGCGAAATATT 302843
| || |||| |||||||| ||
Sbjct 2391350 GGCCG---TCATTTGCGAAATGTT 2391330
>seq8
Length=1110981
Score = 111 bits (122), Expect = 5e-19
Identities = 580/919 (63%), Gaps = 9/919 (1%)
Strand=Plus/Plus
Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646
||| ||| ||||| || || || ||| ||| | | | | | ||| || | |||||||
Sbjct 324381 CAAGAGAGGCCAGGTTGCACACAGCAACCTCATCGGGGGCACAGTACTCGATAATCTCAG 324440
Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706
||||||||| || || ||||| || | ||||||||||| || | ||| ||
Sbjct 324441 TGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGC 324500
Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766
|||||||| || || | || | || ||||| |||| || |||||||| ||
Sbjct 324501 TGTCCTTGTAAAGCATAAAGGGATTGCCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACC 324560
Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATA--TTTCATATA 155824
| || | | || || || | || | | ||||||| || || |||| || |
Sbjct 324561 ACAGCTTCTGAGCTTTGATAACCATGCGGCCACGGCCTTCCTTTTCGTACTTTTCGTACA 324620
Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884
||| ||| | || || ||||| || ||| ||| || ||||||| | |||||| |
Sbjct 324621 GAGC-TTCAA-ACTCATCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACAT 324678
Query 155885 CAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944
||| | ||| | || ||||||| ||| || | || | ||| | |||
Sbjct 324679 CAGAGTCCAGTCCTCGTTCTTCTCAACACGCTTCATGAACAGGTCGCAGATCCACAGAGC 324738
Query 155945 ATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAA 156004
||| | ||| | || ||| || | || || ||||| || || || | |||
Sbjct 324739 CAGGAACAAGTCGCGGGCACGAACCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAGGAA 324798
Query 156005 TTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG-- 156062
|| | || | || || ||||| || |||||||| ||| || ||||
Sbjct 324799 CTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACCGGGCCGCTTGTT 324858
Query 156063 -CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121
|||||||| || ||||| || || || || |||||||||| | |||||||| ||||||
Sbjct 324859 GCCACCCTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACATAGGAACAATACC 324918
Query 156122 ATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATG 156181
||||| || || ||||| ||| ||| | || |||| | |||| || | |
Sbjct 324919 GTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTT 324978
Query 156182 TAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240
|| || || || || | |||| || || || ||| || ||| | |||| | |||
Sbjct 324979 GAGACCGATGCCGCCAG-CCATCTTGGAGATCATAGCACAAGTCTTGAGGGTATCGTAAA 325037
Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300
| || ||||| || || | ||| | |||| |||| ||| | || | | |
Sbjct 325038 TGCCCTCAATGCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACAGCTGGGCCTGAG 325097
Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAAT 156360
| || || |||||||| || || || | ||||| |||| |||| | ||||| |
Sbjct 325098 GGGTACCGGCGTTGAAGAGAGTGGGAGACGCATGGGTAAAGAACTTGCTCGACATGAGGT 325157
Query 156361 CGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCC 156420
||| ||||| || ||| | ||| || ||| | || | || | |||
Sbjct 325158 TGTAAGTCTCGAGAACACGCTCCACATTGTCACCCCAAATGCCGACGGCAACACGCATAA 325217
Query 156421 ACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCA 156480
||| ||||| |||||||| |||||| || || | || ||||| | ||| ||||
Sbjct 325218 TCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAGCTTAAGCAGGTAGGAGCGCTCCA 325277
Query 156481 GAGTTTTAAACCCGAAATA 156499
| || || || || || ||
Sbjct 325278 GGGTCTTGAAGCCAAAGTA 325296
>seq2
Length=3936381
Score = 84.2 bits (92), Expect = 6e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| | |||||| |||||||||||||| || |||||||| |||||||| || ||
Sbjct 3220035 GCACCGTGGGCAATCATGCAATCACGCTCCATCTCTCCGAAACGCAGACCACCGTCACGC 3220094
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGT 251570
|| | |||||| | ||||| || ||
Sbjct 3220095 GCACGACCCTCCACCGGCTGCCGCGT 3220120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817373708044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |