Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 127 6e-24 seq8 111 5e-19 seq2 84.2 6e-11 >seq3 Length=3916844 Score = 127 bits (140), Expect = 6e-24 Identities = 189/264 (72%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| |||||||||||||| ||||||||| | ||||| ||||| || || || ||| Sbjct 2391589 TTGACCAAACGACGCTGAATGTAACCAGTTTCGGCAGTTTTCACAGCAGTGTCGATAAGA 2391530 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAA 302702 || |||||||| |||| ||||||||||| | ||| | || || || || | || | Sbjct 2391529 CCCTCACGACCAGCCATGGCATGGAAGAAGAACTC-GCTGGGGGTCAGGCCACGAAGGTA 2391471 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| |||| || || ||||| || ||||| || | || |||||| || || ||||| Sbjct 2391470 AGAGTTCTCGACAAAGCCACGGGCTTCGGGGGAGTAATCATCCTTGGTGAAATGAGGCAG 2391411 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCAG 302819 || | || || | || | || |||||||| || |||||| | ||||| | |||| Sbjct 2391410 AGTACGGTACTTGAAACCAAAGGGAATACGCTTGCCTTCAACGATTTGCTGACCGACCAG 2391351 Query 302820 GCACGAAATCATCTGCGAAATATT 302843 | || |||| |||||||| || Sbjct 2391350 GGCCG---TCATTTGCGAAATGTT 2391330 >seq8 Length=1110981 Score = 111 bits (122), Expect = 5e-19 Identities = 580/919 (63%), Gaps = 9/919 (1%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 ||| ||| ||||| || || || ||| ||| | | | | | ||| || | ||||||| Sbjct 324381 CAAGAGAGGCCAGGTTGCACACAGCAACCTCATCGGGGGCACAGTACTCGATAATCTCAG 324440 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 ||||||||| || || ||||| || | ||||||||||| || | ||| || Sbjct 324441 TGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGC 324500 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766 |||||||| || || | || | || ||||| |||| || |||||||| || Sbjct 324501 TGTCCTTGTAAAGCATAAAGGGATTGCCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACC 324560 Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATA--TTTCATATA 155824 | || | | || || || | || | | ||||||| || || |||| || | Sbjct 324561 ACAGCTTCTGAGCTTTGATAACCATGCGGCCACGGCCTTCCTTTTCGTACTTTTCGTACA 324620 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 ||| ||| | || || ||||| || ||| ||| || ||||||| | |||||| | Sbjct 324621 GAGC-TTCAA-ACTCATCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACAT 324678 Query 155885 CAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944 ||| | ||| | || ||||||| ||| || | || | ||| | ||| Sbjct 324679 CAGAGTCCAGTCCTCGTTCTTCTCAACACGCTTCATGAACAGGTCGCAGATCCACAGAGC 324738 Query 155945 ATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAA 156004 ||| | ||| | || ||| || | || || ||||| || || || | ||| Sbjct 324739 CAGGAACAAGTCGCGGGCACGAACCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAGGAA 324798 Query 156005 TTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG-- 156062 || | || | || || ||||| || |||||||| ||| || |||| Sbjct 324799 CTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACCGGGCCGCTTGTT 324858 Query 156063 -CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121 |||||||| || ||||| || || || || |||||||||| | |||||||| |||||| Sbjct 324859 GCCACCCTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACATAGGAACAATACC 324918 Query 156122 ATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATG 156181 ||||| || || ||||| ||| ||| | || |||| | |||| || | | Sbjct 324919 GTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTT 324978 Query 156182 TAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 || || || || || | |||| || || || ||| || ||| | |||| | ||| Sbjct 324979 GAGACCGATGCCGCCAG-CCATCTTGGAGATCATAGCACAAGTCTTGAGGGTATCGTAAA 325037 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 | || ||||| || || | ||| | |||| |||| ||| | || | | | Sbjct 325038 TGCCCTCAATGCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACAGCTGGGCCTGAG 325097 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAAT 156360 | || || |||||||| || || || | ||||| |||| |||| | ||||| | Sbjct 325098 GGGTACCGGCGTTGAAGAGAGTGGGAGACGCATGGGTAAAGAACTTGCTCGACATGAGGT 325157 Query 156361 CGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCC 156420 ||| ||||| || ||| | ||| || ||| | || | || | ||| Sbjct 325158 TGTAAGTCTCGAGAACACGCTCCACATTGTCACCCCAAATGCCGACGGCAACACGCATAA 325217 Query 156421 ACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCA 156480 ||| ||||| |||||||| |||||| || || | || ||||| | ||| |||| Sbjct 325218 TCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAGCTTAAGCAGGTAGGAGCGCTCCA 325277 Query 156481 GAGTTTTAAACCCGAAATA 156499 | || || || || || || Sbjct 325278 GGGTCTTGAAGCCAAAGTA 325296 >seq2 Length=3936381 Score = 84.2 bits (92), Expect = 6e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | |||||| |||||||||||||| || |||||||| |||||||| || || Sbjct 3220035 GCACCGTGGGCAATCATGCAATCACGCTCCATCTCTCCGAAACGCAGACCACCGTCACGC 3220094 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGT 251570 || | |||||| | ||||| || || Sbjct 3220095 GCACGACCCTCCACCGGCTGCCGCGT 3220120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817373708044