Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 224 1e-52 seq8 197 2e-44 seq4 190 2e-42 seq2 152 6e-31 seq1 140 4e-27 seq6 89.7 6e-12 seq7 86.0 8e-11 >seq3 Length=3916844 Score = 224 bits (248), Expect = 1e-52 Identities = 287/396 (72%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152 || ||| || ||||||||||| || ||||||||||||||||||| | |||||| | Sbjct 2617655 CAGCTTCGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATCGACAACCCGCCGCCCGG 2617596 Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212 | | | || ||||| ||||||||||||| ||| || || || |||| |||||| | Sbjct 2617595 CCTCTCCCTCACCGAGTCCGACATCCAGCCGCAGCTGACGCGCCGGAGACCCGGCCAGAG 2617536 Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272 ||| | | ||||||||||| || || ||||| | ||| ||| ||| || Sbjct 2617535 CGCCATCACGACGCCGCGCAATGAAAAGGACCGCGTGACCATTTTGTCCGGCTGCGAATT 2617476 Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGT 18332 ||||| |||||||||| | ||| | | ||| || |||| |||||||| ||| Sbjct 2617475 CGGCCGCACGCTCGGCACCCCCATTGCCCTGACCGTCAACAACGAAGACCAGCGCCCCCG 2617416 Query 18333 CGACTATTCCGAC------ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTA 18386 |||||| | || ||| |||| | ||||||||||| |||||||||| |||||| Sbjct 2617415 CGACTACGGCAACCAGACCATGGACAAGTTCCCGCGGCCCTCTCACGCCGACTTCACCTA 2617356 Query 18387 CATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGAC 18446 | ||| |||||| |||||||||| ||||||||||| ||||| ||| || ||||| Sbjct 2617355 CCTGGAAAAGTACAGCATCAAGGCCTCGTCGGGCGGTGGCCGCAGCAGTGCGCGTGAGAC 2617296 Query 18447 CCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 | | |||||| ||||| ||||| ||||||||||| Sbjct 2617295 CATTGCGCGCGTGGCCGCTGGCGCCGTCGCCGAGAA 2617260 Score = 114 bits (126), Expect = 2e-19 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111 || ||||||||| || || ||||| ||||||||||| | ||||||||||||||| Sbjct 2617019 CACCGGCGGCACCGTCACCTGCGTCATCCGCAACGTGCCCACGGGCCTCGGCGAGCCGGC 2616960 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 |||||||||| |||||||| ||| |||||||||||||| ||||| || ||||| Sbjct 2616959 CTTTGACAAGCTCGAGGCCAAGCTAGCCCACGCCATGCTAAGCATCCCCGCTTGCAAGGC 2616900 Query 19172 ATTCGAGATTGGC 19184 || ||||||||| Sbjct 2616899 CTTTGAGATTGGC 2616887 >seq8 Length=1110981 Score = 197 bits (218), Expect = 2e-44 Identities = 312/447 (70%), Gaps = 15/447 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || ||||| ||||||| ||| ||||| || | ||| || || | |||||||| Sbjct 324865 CTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACATAGGAACAATACCGTTGGA 324924 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||||| ||| | ||| || | ||| || | || Sbjct 324925 GGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGACC 324984 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||||||| ||| ||||||||| | || || ||||| || ||||| |||||||| Sbjct 324985 GATGCCGCCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 325044 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || |||| |||||||||| || |||||||| || || || | || | || || Sbjct 325045 AATGCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACAGCTGGGCCTGAGGGGTACC 325104 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||| ||||| | ||| ||| || |||| | ||||||| || ||| || Sbjct 325105 GGCGTTGAAGAGAGTGGGAGACGCATGGGTAAAGAACTTGCTCGACATGAGGTTGTAAGT 325164 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 |||| || ||| ||| ||| ||| | |||| | ||||| ||| || Sbjct 325165 CTCGAGAACACGCTCCA---CATTGTC----------ACCCCAAA--TGCCGACGGCAAC 325209 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||| | ||||| |||||| |||||||| | |||| | ||| ||||||||| Sbjct 325210 ACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAGCTTAAGCAGGTAGGA 325269 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA 1630511 || || |||| ||| ||||||||| Sbjct 325270 GCGCTCCAGGGTCTTGAAGCCAAAGTA 325296 Score = 91.5 bits (100), Expect = 2e-12 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393 ||||||| || || ||||| | || || |||||| ||| |||||| ||| | Sbjct 323811 GGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGG 323870 Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453 ||| | |||| |||| ||||||||||||||||| |||| ||||||||| | || | Sbjct 323871 GCTCAAAGCACTCGTTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAA 323930 Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTG 1627481 | ||||| |||||||| | |||||||| Sbjct 323931 CCAGGAGAGAGTTGCGGACACCGTGCTG 323958 >seq4 Length=2525909 Score = 190 bits (210), Expect = 2e-42 Identities = 237/318 (75%), Gaps = 10/318 (3%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| |||||||||||| |||||| |||||||||||||| |||||||||| Sbjct 2287335 GCCTTTTGGTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATG 2287276 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || ||||||| | |||| ||||||| |||||| | || Sbjct 2287275 TTCTCCATAAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTTCCGAGGGCGACG 2287216 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||| | Sbjct 2287215 AGCAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGG 2287156 Query 868871 AGCGCCAC-CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || ||||| ||||| | |||| ||| ||||| ||||| || |||| || ||| ||| Sbjct 2287155 AG-GCCACAGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGCATCGGTGAT 2287097 Query 868930 GATCTGCCTGGGCACGTCG---GCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCAGGC 868985 |||||| || | | | | || | || | ||||||| | | || | | ||||| | Sbjct 2287096 GATCTG-CTCGACTAGCTGCTTGCTGGGGCGGTTGTTGAGGTG---CGAGAACAGCAGAC 2287041 Query 868986 AGGCAAAGTCGCAGTGCA 869003 ||||||||||| ||||| Sbjct 2287040 AGGCAAAGTCGGTGTGCA 2287023 Score = 183 bits (202), Expect = 4e-40 Identities = 216/288 (75%), Gaps = 11/288 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||||| |||||| |||| ||||| ||||||||||||||||| Sbjct 2287020 CCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCGCGCTTG 2286961 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 ||||| ||||||| | |||| ||||||||| |||||||||||||||||||||||| Sbjct 2286960 CGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAGATGCCCTCGACGGCGGCAAAG 2286901 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356 ||| || |||| ||||||| ||||| |||||||| |||||||||| | ||| Sbjct 2286900 GCGACCAGGCGCTGGGCAAAG--GTCGA----CTCCTTGTCGGTGATCCACTTGAGGGCC 2286847 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTT 869415 ||||||||||| | | |||| | || ||||||||| ||||||| ||| | Sbjct 2286846 CAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTGAAGAGGTAGGTGCGC 2286787 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | | || ||||||| || ||||||||||| ||||| || ||||| Sbjct 2286786 TGC-GAGGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTACGTCTC 2286740 >seq2 Length=3936381 Score = 152 bits (168), Expect = 6e-31 Identities = 213/296 (72%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| |||||| | ||| || | | || ||| || |||| Sbjct 3664849 TCGACGTCGTTCGCAACCGCATCAAAACCTTTGCCCAGAAAAAGGTCACCCTCCCCCCCG 3664908 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||| ||| | |||||||||||||| ||||||| | | || |||| ||||| || | Sbjct 3664909 GCCGCCATAAGCTCATCATCCTCGACGAAGCCGACTCCATGACCTCGGGCGCCCAACAAG 3664968 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 ||||||| ||||||||||| || ||||||| |||||||||||| | || || ||| Sbjct 3664969 CCCTGCGACGCACCATGGAAATCTACTCCAACACCACGCGCTTTGCCTTTGCCTGTAACC 3665028 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGCC 1574247 ||| | | |||||||| | || || ||||||||||| ||||||| || |||| Sbjct 3665029 AGTCCAACAAGATCATCGAGCCACTGCAGTCGCGCTGCGCCATCCTGCGCTATGGCCGCC 3665088 Query 1574248 TGGGTGACGCCCAGATACGCGCGCGCCT-ATGCGATATTGTCGCCGCCGAAAAGGT 1574302 || |||| ||| | | |||||| ||| | || ||| ||||||||||| Sbjct 3665089 TGACCGACGAACAGGTCATCAAGCGCCTGCTGC-AAATCATCGAGGCCGAAAAGGT 3665143 Score = 145 bits (160), Expect = 9e-29 Identities = 97/108 (90%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| |||||||||||||| ||||| ||| |||| |||||| |||| ||||| Sbjct 1709913 GCCTCCAACTATCTCGACATCAAGCCCCTGCTGGATGTTGGCTGCAAGACTGTCGCCAAT 1709972 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1709973 ATGATCAAGGGCAAGTCGCCCGAAGAGATCCGCAAGACCTTCAACATC 1710020 Score = 87.8 bits (96), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 733092 GGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAG--CGTGCGCTCCA 733149 |||||||| | |||| || ||||| |||||||| || | || ||| | || | Sbjct 3220534 GGCGACAAGTTTGCGTCTCGTCACGGTCAAAAGGGTACGATTGGTGTGACGTACCGTCAA 3220475 Query 733150 CCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGC 733209 || |||||||| || |||||| ||| ||||||||||||| | |||||||| | Sbjct 3220474 --GAAGACATGCC---GTTTACGCGCGAGGGCATCACGCCCGACATCATCATCAACCCCC 3220420 Query 733210 ACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGG 733269 ||||||| ||||| || |||||||| | | | || ||||| || || | ||||| | Sbjct 3220419 ACGCCATTCCGTCTCGTATGACCATTGCCCATTTGATCGAGTGTCTTTTGAGTAAGGTTG 3220360 Query 733270 CCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTT 733306 || | | ||||| || |||| ||||||||| Sbjct 3220359 CCACGCTCAAGGGCATGGAGGGTGACGCCACGCCCTT 3220323 >seq1 Length=4318234 Score = 140 bits (154), Expect = 4e-27 Identities = 397/604 (66%), Gaps = 17/604 (3%) Strand=Plus/Minus Query 1852069 GCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTT 1852128 |||||||||||||| | | ||||| ||||| | ||||| | ||||||| |||| || Sbjct 4200993 GCTCATCTTGCCGCCC---GACAGGCCGGGCACCATGGGGTTCATCAGGTGGCAGCGGTT 4200937 Query 1852129 CCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCG 1852188 || ||||||| |||| | |||| ||| | | |||| ||||||||||| ||| | Sbjct 4200936 CCTGAAGCCGAGCTTGGGCATGGCGTCGTGCGACAGGCCAAAGATCTTGCGCTGATCGAG 4200877 Query 1852189 CCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTA 1852248 |||||||||| ||||||||| | ||||| || |||||| || |||||| |||||||| Sbjct 4200876 GCCGCCAAACTCGGCGTCGACCTTGAGGTACTCCTCGTCCAGCAGCTGCATCAGCGGGTA 4200817 Query 1852249 GAGCACGTTGCTCAGGAGCGGGTTGCGGTCCATCTTGACCACCTGAGCGGCGGCCTTTTG 1852308 || ||| | || | ||| | | ||||| || | || | ||| | Sbjct 4200816 CAGGCCGTCGGCCATGCACGGCTCACCCATGATCTTAACAATCTCGCTCGAGGC-----G 4200762 Query 1852309 CGCCGTGCCGGTGCGCACGTGCGCC-----GC-GAGTCGGTAGAGGTCGAGCGCGTAGGC 1852362 ||| | | || | |||| | || || || || |||||| || ||| | Sbjct 4200761 CGCAG-GGCGTCGTGCACCGACACCTTTTTGCTCAGACGCAGCAGGTCGCGCATGTACTC 4200703 Query 1852363 GCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGAT 1852422 | | ||||||| | ||||||||||||||||||| | ||| ||||||| Sbjct 4200702 GGGCGTGAGCTGGTACGAGCTGCCGCGCACAAACTCGAGGCGTGACAGGTCGACGCCGAC 4200643 Query 1852423 GTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCAC-CGGTGTTCGACCAGGT 1852481 | | |||| | |||| |||||| | | || | |||| || | || Sbjct 4200642 GGCCGTCAGCAGCGAGCGGATGATGCGCTCGTAGTA-CTGCGCGCGGTTCTCCAGCACAC 4200584 Query 1852482 CCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCC 1852541 | |||| |||| || || ||| |||||||| ||||| | ||||||||||| Sbjct 4200583 TCTCGGGCGCCTTGTCGGCATCCAGGAAGGCGTGCAGATCGGCCAGCAGGATCTTGACGG 4200524 Query 1852542 GACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCG 1852601 || |||||||| || || | ||||| |||| | ||||| | ||| | ||||| Sbjct 4200523 TGCACCCGGCCTGCAGGAACTGTGCCAGCTTGATGGCCGGCACGAGGTACGCGGCGTGCG 4200464 Query 1852602 GGTTGCCCGTCGGCGCCGTGCCCCAATATATGATCAGGGGGCGCTCGGCCATGATGGCCT 1852661 | ||| || | |||||||||||||| ||| | | | |||||||| || ||| || Sbjct 4200463 GCCGGCCGGTGGTGGCCGTGCCCCAATAGATGCTGATGTCGCGCTCGGGCAGGATCTTCT 4200404 Query 1852662 TGAT 1852665 |||| Sbjct 4200403 TGAT 4200400 >seq6 Length=1530755 Score = 89.7 bits (98), Expect = 6e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 450767 AGCGCATGACGCGCACCGGCCGCGTTTGGCCGATGCGGTGCACGCGGTCGACGGCCTGCG 450826 |||||| | |||||| || ||||||||||| | |||||||||||||| | ||||||| Sbjct 97071 AGCGCACGGTGCGCACGGGGCGCGTTTGGCCCAGCCGGTGCACGCGGTCAATAGCCTGCG 97012 Query 450827 CCTCGGCAAACGGATTGTAGTGCGCGTCCATGAGCAGCACATAGTTGGCGCACACGAGGT 450886 ||||||| ||| ||||| |||| ||||||| ||| | |||| || | |||| Sbjct 97011 CCTCGGCCGCCGGGTTGTACTGCGGCTCCATGACGTACACGTTGTTGCCGGCCGTCAGGT 96952 Query 450887 TGAGGCC 450893 |||| || Sbjct 96951 TGAGCCC 96945 >seq7 Length=1169112 Score = 86.0 bits (94), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 1726966 GTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGAC 1727025 ||||| |||||||||| || |||||||||||| ||||| ||||||||||||||||| | Sbjct 585050 GTCGATGTCGGGGTCGTTGATCAGGCCCTTCCAGCCGACAGTCGTGCGCGGCTTTTCCAG 584991 Query 1727026 ATAGGCGCGCATGAC 1727040 || | ||||||||| Sbjct 584990 GTACGAGCGCATGAC 584976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138215223804