Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq8 246 3e-60 seq3 98.7 9e-16 seq10 84.2 2e-11 >seq8 Length=1110981 Score = 246 bits (272), Expect = 3e-60 Identities = 1075/1675 (64%), Gaps = 58/1675 (3%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCA-ATATTTTG 138416 || |||||||| ||||||||||| | |||| || || | || ||| |||||||| Sbjct 323669 ATTTCCCACACCGTCTTGTATAGCGCCTTGATATC-CGTGGGAATGCTGCTGATATTTTG 323727 Query 138417 AATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT 138476 ||| |||||| | |||||||| || || |||||| ||| |||| | | Sbjct 323728 GATGGAGCCGTTGTCGGCAATGATCCGGTTCTTCATGTTATCAGACCACAGGCCAAGGTC 323787 Query 138477 GATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACG 138536 || | |||| | ||| | ||| | ||||| || || ||||| | || || || Sbjct 323788 GACAAGGTCGCGCAGCAGCCAAGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCG 323847 Query 138537 AACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGT 138596 |||||||||| ||| | |||||||| | |||||||| ||||| ||||| | ||| Sbjct 323848 CTGGTAAATGTTGGAAGTGTAGGGCTCAAAGCACTCGTTGTTACCCAGGATCTGCGACGT 323907 Query 138597 GGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCG 138656 | || || |||||| || |||| ||||| || || | |||||| |||| || Sbjct 323908 ACTGGCAGTGGGCATGGGTGCAACCAGGAGAGAGTTGCGGACACCGTGCTGCTTAATCTT 323967 Query 138657 TTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 |||||||| || | ||||||||| | |||||| || | | |||||| || | || Sbjct 323968 CTCCTTGAGGGAAGTCCAGTCCCAAAGATCGCTGGGCGTCACATCCCACATGTCAAATTG 324027 Query 138717 TAACATTCCCAAACTTGCGGGACTG-----CCTTCGTACGAATCGTATACACCAA-ACTC 138770 | || ||| |||| ||| | || || || | | |||| || | || Sbjct 324028 CAGGATGCCC-----TGCGAGACCGGCGAGCCCTCATAAGTAGAGTATGTGCCCTCAGTC 324082 Query 138771 TTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTG 138830 | | || | ||| | ||| |||||| | | ||| || || || |||||||| Sbjct 324083 TGG-GCAATCTCCATTGAGGCCGTCAGCGCAGCGTGGTAGATGGTCTCAAAAATCTGCTT 324141 Query 138831 ATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGC 138890 || ||| || ||||||| ||| | |||||||| || | ||| || || || Sbjct 324142 GTTCAGCTGACGAGCCTCGGGAGACTCAAAAGGCATGCGCAGAGCCAGGAAGGCATCAGC 324201 Query 138891 CAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGC-GGCTT 138949 ||| || || || || || || | ||||| ||||||| || ||| ||| ||| | Sbjct 324202 CAGACCCTGGACACCGACACCAATCGGGCGGTGGCGCATGTT----GCTGTTGTAGGCCT 324257 Query 138950 C---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAG 139006 | || ||| || | ||| ||||| ||||| ||| | || || || || |||| | Sbjct 324258 CCGTGACAGGGTAGTGGTTCACATCAATGATGCGGTTCAGGTTGCGGACAACGACCTGTG 324317 Query 139007 TCGTATGCTTTAATCGTTCAAAA-TCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACA 139065 | | | | | || | ||| ||| ||||| |||| ||||| ||| || | Sbjct 324318 T-GACTTCATGAAGCTTTCCAAAGTCGTACTCGCCCTTGTTGTAGTCAAC---------A 324367 Query 139066 AATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTAT 139125 ||| | | || ||||| | ||||||||| || || || |||||| | | ||| Sbjct 324368 AATGAGGGCAGGGCAAGAGAGGCCAGGTTGCACACAGCAACCTCATCGGGGGCACAGTAC 324427 Query 139126 TCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTT 139185 |||| ||| || | |||| || | || ||||| | || | || ||||| Sbjct 324428 TCGATAATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTC 324487 Query 139186 TTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCT 139245 || ||||| || || |||||||||||| | || ||||||| || || | ||| Sbjct 324488 TTGCGGTTGCAGCTGTCCTTGTAAAGCATAAAGGGATTGCCAGTCTCGGTCTGGGCCTCC 324547 Query 139246 ATAATGAATTTGAACAAGTCCCTAGCTTGTATTTG-ACGCACGTAAAGTTCGTCGCGCTC 139304 | |||| | ||| | | ||||| || | || | | | | || || Sbjct 324548 AGAATGGCGTACCACAGCTTCTGAGCTTTGATAACCATGCG-GCCACGGCCTTCCTTTTC 324606 Query 139305 GTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTT 139364 |||||||||||| || | || || || |||||| ||||| || || | |||| Sbjct 324607 GTACTTTTCGTACAGAGCTTCAAACTCATCGCCGTAGCAGTCAGCCAGGCCGGGGCACTC 324666 Query 139365 GTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGG 139424 || || ||||| || | ||| | ||||| || || ||| |||||||||| || Sbjct 324667 GTTGGGGCACATCAGAGTCCAGTCCTCGTTCTTCTCAACACGCTTCATGAACAGGTCGCA 324726 Query 139425 AATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGT-T 139483 ||||||| ||| | | ||| ||||| || |||||| ||||| | | | Sbjct 324727 GATCCACAGAGCCAGGAACAAGTCGCGGGCACGAACCTCTTCC-TTTCCATGGTTCTTGC 324785 Query 139484 TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGC 139543 || || |||||| ||||| ||||| |||||||| |||||||| || || || | || | Sbjct 324786 GCAGGTCAAGGAACTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCAC 324845 Query 139544 CTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACA 139600 | ||| |||||||| || || || | || | | || ||||| || ||||||| Sbjct 324846 CGGGCCGCTTGTTGCCACCCTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACA 324905 Query 139601 TCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATG--GGA-CTGTTGCGAGC 139655 | || | | |||| | | || |||||||||| ||| ||| ||| | || || Sbjct 324906 TAGGAACAATACCGTTGGAGGTACCGTTGGTGC--CGGCAATGTAGGAGCCAGTG---GC 324960 Query 139656 TCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-T 139714 || | | || || |||| ||||| ||||| | | ||||| || | | | ||| | Sbjct 324961 ACGAATGCGGTGGACGTTGAGACCGATGCCGCCAGCCATCTTGGAGATCATAGCACAAGT 325020 Query 139715 CGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATG 139774 | | | || ||||| || || ||||||||||||| ||| ||| |||||||||| Sbjct 325021 CTTG-AGGGTATCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGACTAGAAAGCATG 325079 Query 139775 ACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACA 139834 | || || || | | || ||||| || ||||| ||| ||| || || || | Sbjct 325080 AAGACAGCTGGGCCTGAGGGGTACCGGCGTTGAAGAGAGTGGGAGACGCATGGGTAAAGA 325139 Query 139835 TTTGTTTCGACATCAATTCGTACGTTTC--GATGGCGCT-CACAATATCCCTTCCGTGGA 139891 | ||||||| | | ||| || || || |||| |||| | || || | Sbjct 325140 ACTTGCTCGACATGAGGTTGTAAGTCTCGAGAACACGCTCCACATTGTC---ACCCCAAA 325196 Query 139892 TACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttt 139951 | ||||| | || ||||| | ||| || ||| || ||| | | | ||| |||| | Sbjct 325197 TGCCGACGGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAGCT 325256 Query 139952 ttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 | ||| || | ||| ||||||||| ||||||||||| |||||||| || Sbjct 325257 TAAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTC 325311 >seq3 Length=3916844 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || |||||||| || | || Sbjct 1905435 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCC 1905376 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 1905375 GACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1905316 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||| |||||| | | | | || || || ||| Sbjct 1905315 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAAC 1905256 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || | || | || ||||||| || Sbjct 1905255 ATTCAAAAGGAGTCCACTCTGCATCTCGTCCTCCGTCTGCGCGGTGG 1905209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || || || |||||||| || || | || || | || | Sbjct 1905135 AAGACCCTGACTGGAAAGACCATAACTCTCGAAGTCGAGTCCTCTGATACCATTGACAAC 1905076 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||||||||| || || || || || || || || ||| | || || Sbjct 1905075 GTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATTTTC 1905016 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||||| |||||| | | | ||||| || ||||| || |||||||| Sbjct 1905015 GCTGGCAAGCAGCTTGAGGATGGTCGCACTCTCTCAGACTACAACATCCAGAAGGAATCT 1904956 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || |||| |||| |||| |||||| Sbjct 1904955 ACTCTGCATCTGGTTCTGCGTCTGCGTGGAGGC 1904923 >seq10 Length=988720 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || ||||| || ||||| ||||| || || || | Sbjct 887337 GATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 887278 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 887277 GGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCA 887218 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| || || || ||||||||||| | | | |||| || || || Sbjct 887217 GCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTACAA 887158 Query 24883 CATTCAAAAGG 24893 ||| || |||| Sbjct 887157 CATCCAGAAGG 887147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897532515360