Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 >seq2 Length=3936381 Score = 113 bits (124), Expect = 4e-20 Identities = 214/313 (68%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 ||||| ||||| | || | | |||| ||||||||| |||||||||| | || Sbjct 1499330 GTCTCAGGGTTCTTGCACTTCTTGCACAGAACAAACTTGACAATGAAACCATAGACGTGG 1499271 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 ||||| | ||| || ||| ||||||||||||| ||| | || || | | || Sbjct 1499270 TCCTGCAGCTTCTTGGTGTCATGGGAGCCGTTGATGATCCAGCGGTCATCCGGGGGGTCA 1499211 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | | || || || || ||||| | || |||||||| || ||| | || || Sbjct 1499210 ATGTTGGTCTGGGCACCGAGCTCAAAGCCAAAGTACTTGATCAGGTGGGCACCAGGGCGG 1499151 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 |||| | || ||||| | | || |||||||| ||||||||||| ||||| ||||| Sbjct 1499150 GCAAGAGACTGGGCGACGGCAGACAGGTTGACGACAACAGTCTTGATACCGTTACCCTTG 1499091 Query 34561 CCTTCGACCTTGG--CGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACAT 34618 || |||| ||||| ||||| || ||||| ||||| ||||||||| ||| | | | Sbjct 1499090 CCCTCGATCTTGGTTTGCAGA--CGGGGCATCTTGTACCGGTAGAACTGGTCGGAGATGT 1499033 Query 34619 TGCGGTTAACGTT 34631 | |||| ||||| Sbjct 1499032 CGGGGTTGACGTT 1499020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841539621916