Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 197 2e-44 seq8 161 2e-33 seq2 161 2e-33 seq1 140 5e-27 seq6 93.3 7e-13 seq7 91.5 2e-12 >seq4 Length=2525909 Score = 197 bits (218), Expect = 2e-44 Identities = 245/331 (74%), Gaps = 11/331 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||| |||||| ||| ||||| ||||||||||||||||| Sbjct 2287020 CCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCGCGCTTG 2286961 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 ||||| ||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct 2286960 CGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAGATGCCCTCGACGGCGGCAAAG 2286901 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT---TGATCCACTTCATCGCC 794517 |||| || |||| |||||| ||| | ||| |||| |||||||||| | ||| Sbjct 2286900 GCGACCAGGCGCTGGGCAAA--GGTCGA----CTCCTTGTCGGTGATCCACTTGAGGGCC 2286847 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTT 794576 || || ||||| | | | || | || ||||||||| ||||||| ||| | Sbjct 2286846 CAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTGAAGAGGTAGGTGCGC 2286787 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 ||| || ||||||| ||| |||||||| || |||||||| ||||| ||||||||||| Sbjct 2286786 TGCGA-GGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTACGTCTCGGAGTGGATGTT 2286728 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || |||||||||||| || |||||| Sbjct 2286727 CTCCATCATGATCTGGAAGCCGTAGAAGCAG 2286697 Score = 192 bits (212), Expect = 9e-43 Identities = 199/256 (78%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 |||||| ||||| || |||||||||||| |||||| |||||||||||||| |||| Sbjct 2287342 GACGCCGGCCTTTTGGTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAG 2287283 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 |||||| |||||| | || ||||||| | ||||| ||| ||| ||||| Sbjct 2287282 CGAGATGTTCTCCATAAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTTCCGAG 2287223 Query 794012 --CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||| Sbjct 2287222 GGCGACG--AGCAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTC 2287165 Query 794070 ATGCCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 ||||||| ||| ||||| |||||| | |||| | | ||||| ||||| || |||| || Sbjct 2287164 ATGCCGAGGAG-GCCACAGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGC 2287106 Query 794129 CTCGATGATGATCTGC 794144 ||| ||||||||||| Sbjct 2287105 ATCGGTGATGATCTGC 2287090 >seq8 Length=1110981 Score = 161 bits (178), Expect = 2e-33 Identities = 338/504 (67%), Gaps = 21/504 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| |||||||| ||||||| ||| ||||| || | ||| || |||| |||||||| Sbjct 324865 CTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACATAGGAACAATACCGTTGGA 324924 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||||| ||| | ||| || | ||| || | || Sbjct 324925 GGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGACC 324984 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||||||| ||| ||||||||| | || || | || || || ||||| |||||||| Sbjct 324985 GATGCCGCCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 325044 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| |||||||||| | |||||||| || || || | | | || || Sbjct 325045 AATGCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACAGCTGGGCCTGAGGGGTACC 325104 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| |||||||| ||||| | ||| || | ||| |||||| | ||| || Sbjct 325105 GGCGTTGAAGAGAGTGGGAGACGCATGGGTAAAGAACTTGCTCGACATGAGGTTGTAAGT 325164 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 |||| || ||| ||| ||| | |||| | ||||| ||| || Sbjct 325165 CTCGAGAACACGCTCCACATTGTC-------------ACCCCAAA--TGCCGACGGCAAC 325209 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAGGTA 2073956 ||||| ||||||| |||||| |||||||| | | ||||| | ||| |||||| Sbjct 325210 ACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCG---AGCTTAAGCAGGTA 325266 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 ||| || ||||||| | |||||||||| |||| | ||| || |||| || Sbjct 325267 GGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAAT 325326 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||| | || || | |||||||| Sbjct 325327 GGCAGAATCCAGCTCTTCCTTGTG 325350 Score = 89.7 bits (98), Expect = 8e-12 Identities = 169/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 2071768 AGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAG 2071827 || || ||||| | |||||| ||| || ||||||||| |||| ||||| | Sbjct 324620 AGAGCTTCAAACTCATCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATC 324679 Query 2071828 AGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAG-GCC 2071886 || | |||||| || || | || || ||| ||||||||||| ||||||| ||| Sbjct 324680 AGAGTCCAGTCCTCGTTCTTCTCAACACGCTTCATGAACAGGTCGCAGATCCACAGAGCC 324739 Query 2071887 GTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCA 2071946 || || ||||| || || ||| ||||| || |||||||| |||||| || | Sbjct 324740 AGGAACAAG-TCGCGGGCACGAACCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAGGAA 324798 Query 2071947 GTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCC 2072006 || | | |||||||||||| || |||||||| |||||||| || |||||| Sbjct 324799 CTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACCGGGCCGCTTGTT 324858 Query 2072007 GCCGCC 2072012 ||| || Sbjct 324859 GCCACC 324864 >seq2 Length=3936381 Score = 161 bits (178), Expect = 2e-33 Identities = 184/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253 ||| || ||||||||||| ||| | ||||||||||| || ||||||| | | || |||| Sbjct 3664898 CCTCCCCCCCGGCCGCCATAAGCTCATCATCCTCGACGAAGCCGACTCCATGACCTCGGG 3664957 Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313 ||||| || ||||| ||| |||||||||| ||| ||||||| ||||| ||||| | Sbjct 3664958 CGCCCAACAAGCCCTGCGACGCACCATGGAAATCTACTCCAACACCACGCGCTTTGCCTT 3665017 Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 ||||| ||| ||| | | ||||||| | || ||| || ||||||||| |||| Sbjct 3665018 TGCCTGTAACCAGTCCAACAAGATCATCGAGCCACTGCAGTCGCGCTGCGCCATCCTGCG 3665077 Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433 || || ||||| ||||||| ||| || | ||| |||| | || ||||| ||||| Sbjct 3665078 CTATGGCCGCCTGACCGACGAACAGGTCATCAAGCGCCTGCTGCAAATCATCGAGGCCGA 3665137 Query 2019434 AAAGGTC 2019440 ||||||| Sbjct 3665138 AAAGGTC 3665144 Score = 127 bits (140), Expect = 3e-23 Identities = 93/108 (86%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| ||||||||||||||||| || ||| | || |||||||| || ||||| Sbjct 1709913 GCCTCCAACTATCTCGACATCAAGCCCCTGCTGGATGTTGGCTGCAAGACTGTCGCCAAT 1709972 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754 | |||||||||||||||||||| || |||||||||||||| |||||| Sbjct 1709973 ATGATCAAGGGCAAGTCGCCCGAAGAGATCCGCAAGACCTTCAACATC 1710020 Score = 109 bits (120), Expect = 9e-18 Identities = 320/489 (65%), Gaps = 21/489 (4%) Strand=Plus/Minus Query 653657 GGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGGCAG--CGTGCGCTCGA 653714 |||||||| | |||| || ||||| |||||||| || | || ||| | || | Sbjct 3220534 GGCGACAAGTTTGCGTCTCGTCACGGTCAAAAGGGTACGATTGGTGTGACGTACCGTCAA 3220475 Query 653715 CCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGC 653774 || || ||||||| ||| ||| |||| ||||||||||||| |||||||||| | Sbjct 3220474 --GAAGACATGCCGTTTACGC---GCGAGGGCATCACGCCCGACATCATCATCAACCCCC 3220420 Query 653775 ACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTGG 653834 ||||||| ||||| || |||||||| | | | |||| ||| || || | ||||| | Sbjct 3220419 ACGCCATTCCGTCTCGTATGACCATTGCCCATTTGATCGAGTGTCTTTTGAGTAAGGTTG 3220360 Query 653835 CCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTTTGGCGGCGTCACCGTNNNNNNNN 653894 || | | ||||| | ||| |||| ||| || || || ||| || || Sbjct 3220359 CCACGCTCAAGGGCATGGAGGGTGACGCCACGCCCTTCACCGACGTGACAGTCGACTCGG 3220300 Query 653895 NNNNNNNNNAGTTGGCCCGCCACGGGT-GCGAGCGCTACGGCAAGGAGGTGCTCTACCAC 653953 |||| || || || | | | ||| ||| |||| | |||||| Sbjct 3220299 TGTCTGCGCTGTTGCGCCAGCATGGATACCAATCGC-GTGGCTTCGAGGCCATGTACCAC 3220241 Query 653954 CCGCACACGGGCGAGCCCATGGAG-GC-----GTTGATCTTTTCGGCGCCGGTCTACTAC 654007 ||||||||| | || | | || | || ||||| ||| || |||||| Sbjct 3220240 GGCCACACGGGC---CGCAAGCTGCGCGCACAGGTGTTCTTT--GGC-CCCACGTACTAC 3220187 Query 654008 CAGGCCCTGCGCCACGTGGCCATCGACAAGATCCACGCCCGGCCGCGCGGCCCCGTGCAG 654067 ||| ||||| ||| ||| ||||||||||||||| || |||| ||||| |||||| Sbjct 3220186 CAGCGTCTGCGTCACATGGTGGACGACAAGATCCACGCGCGTGCGCGAGGCCCGGTGCAG 3220127 Query 654068 ATGCTCACCAAGCAGCCGGTCGAGGGCCGGTCGCGCTCGGGCGGCTTTCGCCTCGGAGAG 654127 || | || ||||||||| ||||| || |||| || || | || |||||||| Sbjct 3220126 ATCATGACGCGGCAGCCGGTGGAGGGTCGTGCGCGTGACGGTGGTCTGCGTTTCGGAGAG 3220067 Query 654128 ATGGAGAGT 654136 |||||| || Sbjct 3220066 ATGGAGCGT 3220058 >seq1 Length=4318234 Score = 140 bits (154), Expect = 5e-27 Identities = 398/603 (66%), Gaps = 13/603 (2%) Strand=Plus/Minus Query 2411412 GCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTT 2411471 ||||||||||||| || | ||||| ||||||| ||||| | ||||||| ||| || Sbjct 4200993 GCTCATCTTGCCGCCC---GACAGGCCGGGCACCATGGGGTTCATCAGGTGGCAGCGGTT 4200937 Query 2411472 GCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCG 2411531 | | |||| ||| |||| | |||| ||| | | |||||||||||||||| ||| | Sbjct 4200936 CCTGAAGCCGAGCTTGGGCATGGCGTCGTGCGACAGGCCAAAGATCTTGCGCTGATCGAG 4200877 Query 2411532 CCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTA 2411591 |||||||||| ||||||||| | ||||| || |||||| || |||||| |||||||| Sbjct 4200876 GCCGCCAAACTCGGCGTCGACCTTGAGGTACTCCTCGTCCAGCAGCTGCATCAGCGGGTA 4200817 Query 2411592 GACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCTTGACCACCTGG---GCGGCGGCCTT 2411648 | | || | | ||| | | ||||| || | || | | ||| || Sbjct 4200816 CAGGCCGTCGGCCATGCACGGCTCACCCATGATCTTAACAATCTCGCTCGAGGC-GCGCA 4200758 Query 2411649 TTGCGCCGTGCCGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTCGAGCGTGTAGGC-GG 2411707 ||| ||||| || | ||| |||| |||| |||||| || |||| | || Sbjct 4200757 GGGCGTCGTGC--ACCGACACCTTTTTGCTCAGACGCAGCAGGTCGCGCATGTACTCGGG 4200700 Query 2411708 CGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGT 2411767 || | ||||||| ||||||||||||||| ||||| || ||| |||||| | | Sbjct 4200699 CGTGA-GCTGGTACGAGCTGCCGCGCACAAACTCGAGGCGTGACAGGTCGACGCCGACGG 4200641 Query 2411768 GCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCAC-CGGTGCTCGACGAGGTCC 2411826 | |||| | |||| |||||| | | || | |||| ||| | | | Sbjct 4200640 CCGTCAGCAGCGAGCGGATGATGCGCTCGTAGTA-CTGCGCGCGGTTCTCCAGCACACTC 4200582 Query 2411827 CACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGA 2411886 |||| |||| | || ||| |||||||| ||||| | |||||| | || Sbjct 4200581 TCGGGCGCCTTGTCGGCATCCAGGAAGGCGTGCAGATCGGCCAGCAGGATCTTGACGGTG 4200522 Query 2411887 CATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGC 2411946 || |||||||| || || | ||||| || | | ||||| | ||| | || ||| Sbjct 4200521 CACCCGGCCTGCAGGAACTGTGCCAGCTTGATGGCCGGCACGAGGTACGCGGCGTGCGGC 4200462 Query 2411947 TTGCCCGTCGGCGCGGTGCCCCAATAAATGCAGAGAGGGCGCTCGGCCATGATGGCCTTG 2412006 ||| || | || ||||||||||| |||| || |||||||| || ||| |||| Sbjct 4200461 CGGCCGGTGGTGGCCGTGCCCCAATAGATGCTGATGTCGCGCTCGGGCAGGATCTTCTTG 4200402 Query 2412007 ATG 2412009 ||| Sbjct 4200401 ATG 4200399 >seq6 Length=1530755 Score = 93.3 bits (102), Expect = 7e-13 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 372086 AGCGTACGACGCGCACCGGGCGCGTCTGGCCGATGCGGTGCACGCGATCGATCGCCTGCG 372145 |||| ||| |||||| |||||||| ||||| | ||||||||||| || || ||||||| Sbjct 97071 AGCGCACGGTGCGCACGGGGCGCGTTTGGCCCAGCCGGTGCACGCGGTCAATAGCCTGCG 97012 Query 372146 CCTCGGCAAACGGATTGTAGTGCGCGTCCATGAGGAGCACATAGTTGGC-GCAGACGAGG 372204 ||||||| ||| ||||| |||| ||||||| | ||| | |||| | || | | ||| Sbjct 97011 CCTCGGCCGCCGGGTTGTACTGCGGCTCCATGACGTACACGTTGTTGCCGGCCGTC-AGG 96953 Query 372205 TTGAGACC 372212 ||||| || Sbjct 96952 TTGAGCCC 96945 >seq7 Length=1169112 Score = 91.5 bits (100), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 2175311 GTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGAC 2175370 ||||| |||||||||| || |||||||||||| ||||| ||||||||||||||||| | Sbjct 585050 GTCGATGTCGGGGTCGTTGATCAGGCCCTTCCAGCCGACAGTCGTGCGCGGCTTTTCCAG 584991 Query 2175371 ATAGGCGCGCATGACCACCAGGAGAGCGTC 2175400 || | ||||||||| | ||| || |||| Sbjct 584990 GTACGAGCGCATGACAATCAGCAGCTCGTC 584961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916245123505268