Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq4 197 2e-44
seq8 161 2e-33
seq2 161 2e-33
seq1 140 5e-27
seq6 93.3 7e-13
seq7 91.5 2e-12
>seq4
Length=2525909
Score = 197 bits (218), Expect = 2e-44
Identities = 245/331 (74%), Gaps = 11/331 (3%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||| || ||||| |||||| ||| ||||| |||||||||||||||||
Sbjct 2287020 CCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCGCGCTTG 2286961
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 2286960 CGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAGATGCCCTCGACGGCGGCAAAG 2286901
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT---TGATCCACTTCATCGCC 794517
|||| || |||| |||||| ||| | ||| |||| |||||||||| | |||
Sbjct 2286900 GCGACCAGGCGCTGGGCAAA--GGTCGA----CTCCTTGTCGGTGATCCACTTGAGGGCC 2286847
Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTT 794576
|| || ||||| | | | || | || ||||||||| ||||||| ||| |
Sbjct 2286846 CAGTCGGCCTTGCGGCGGATGCACGGGATGGTATCGATGGCGTTGAAGAGGTAGGTGCGC 2286787
Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636
||| || ||||||| ||| |||||||| || |||||||| ||||| |||||||||||
Sbjct 2286786 TGCGA-GGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTACGTCTCGGAGTGGATGTT 2286728
Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667
|| || |||||||||||| || ||||||
Sbjct 2286727 CTCCATCATGATCTGGAAGCCGTAGAAGCAG 2286697
Score = 192 bits (212), Expect = 9e-43
Identities = 199/256 (78%), Gaps = 6/256 (2%)
Strand=Plus/Minus
Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951
|||||| ||||| || |||||||||||| |||||| |||||||||||||| ||||
Sbjct 2287342 GACGCCGGCCTTTTGGTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAG 2287283
Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011
|||||| |||||| | || ||||||| | ||||| ||| ||| |||||
Sbjct 2287282 CGAGATGTTCTCCATAAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTTCCGAG 2287223
Query 794012 --CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069
||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 2287222 GGCGACG--AGCAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTC 2287165
Query 794070 ATGCCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128
||||||| ||| ||||| |||||| | |||| | | ||||| ||||| || |||| ||
Sbjct 2287164 ATGCCGAGGAG-GCCACAGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGC 2287106
Query 794129 CTCGATGATGATCTGC 794144
||| |||||||||||
Sbjct 2287105 ATCGGTGATGATCTGC 2287090
>seq8
Length=1110981
Score = 161 bits (178), Expect = 2e-33
Identities = 338/504 (67%), Gaps = 21/504 (4%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||| |||||||| ||||||| ||| ||||| || | ||| || |||| ||||||||
Sbjct 324865 CTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACATAGGAACAATACCGTTGGA 324924
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||||| || | ||||| ||| | ||| || | ||| || | ||
Sbjct 324925 GGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGACC 324984
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||||||||| ||| ||||||||| | || || | || || || ||||| ||||||||
Sbjct 324985 GATGCCGCCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 325044
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| |||| |||||||||| | |||||||| || || || | | | || ||
Sbjct 325045 AATGCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACAGCTGGGCCTGAGGGGTACC 325104
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839
||| |||||||| ||||| | ||| || | ||| |||||| | ||| ||
Sbjct 325105 GGCGTTGAAGAGAGTGGGAGACGCATGGGTAAAGAACTTGCTCGACATGAGGTTGTAAGT 325164
Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899
|||| || ||| ||| ||| | |||| | ||||| ||| ||
Sbjct 325165 CTCGAGAACACGCTCCACATTGTC-------------ACCCCAAA--TGCCGACGGCAAC 325209
Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAGGTA 2073956
||||| ||||||| |||||| |||||||| | | ||||| | ||| ||||||
Sbjct 325210 ACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCG---AGCTTAAGCAGGTA 325266
Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016
||| || ||||||| | |||||||||| |||| | ||| || |||| ||
Sbjct 325267 GGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAAT 325326
Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040
||| | || || | ||||||||
Sbjct 325327 GGCAGAATCCAGCTCTTCCTTGTG 325350
Score = 89.7 bits (98), Expect = 8e-12
Identities = 169/246 (69%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 2071768 AGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAG 2071827
|| || ||||| | |||||| ||| || ||||||||| |||| ||||| |
Sbjct 324620 AGAGCTTCAAACTCATCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATC 324679
Query 2071828 AGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAG-GCC 2071886
|| | |||||| || || | || || ||| ||||||||||| ||||||| |||
Sbjct 324680 AGAGTCCAGTCCTCGTTCTTCTCAACACGCTTCATGAACAGGTCGCAGATCCACAGAGCC 324739
Query 2071887 GTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCA 2071946
|| || ||||| || || ||| ||||| || |||||||| |||||| || |
Sbjct 324740 AGGAACAAG-TCGCGGGCACGAACCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAGGAA 324798
Query 2071947 GTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCC 2072006
|| | | |||||||||||| || |||||||| |||||||| || ||||||
Sbjct 324799 CTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACCGGGCCGCTTGTT 324858
Query 2072007 GCCGCC 2072012
||| ||
Sbjct 324859 GCCACC 324864
>seq2
Length=3936381
Score = 161 bits (178), Expect = 2e-33
Identities = 184/247 (74%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253
||| || ||||||||||| ||| | ||||||||||| || ||||||| | | || ||||
Sbjct 3664898 CCTCCCCCCCGGCCGCCATAAGCTCATCATCCTCGACGAAGCCGACTCCATGACCTCGGG 3664957
Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313
||||| || ||||| ||| |||||||||| ||| ||||||| ||||| ||||| |
Sbjct 3664958 CGCCCAACAAGCCCTGCGACGCACCATGGAAATCTACTCCAACACCACGCGCTTTGCCTT 3665017
Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373
||||| ||| ||| | | ||||||| | || ||| || ||||||||| ||||
Sbjct 3665018 TGCCTGTAACCAGTCCAACAAGATCATCGAGCCACTGCAGTCGCGCTGCGCCATCCTGCG 3665077
Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433
|| || ||||| ||||||| ||| || | ||| |||| | || ||||| |||||
Sbjct 3665078 CTATGGCCGCCTGACCGACGAACAGGTCATCAAGCGCCTGCTGCAAATCATCGAGGCCGA 3665137
Query 2019434 AAAGGTC 2019440
|||||||
Sbjct 3665138 AAAGGTC 3665144
Score = 127 bits (140), Expect = 3e-23
Identities = 93/108 (86%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| ||||||| ||||||||||||||||| || ||| | || |||||||| || |||||
Sbjct 1709913 GCCTCCAACTATCTCGACATCAAGCCCCTGCTGGATGTTGGCTGCAAGACTGTCGCCAAT 1709972
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754
| |||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 1709973 ATGATCAAGGGCAAGTCGCCCGAAGAGATCCGCAAGACCTTCAACATC 1710020
Score = 109 bits (120), Expect = 9e-18
Identities = 320/489 (65%), Gaps = 21/489 (4%)
Strand=Plus/Minus
Query 653657 GGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGGCAG--CGTGCGCTCGA 653714
|||||||| | |||| || ||||| |||||||| || | || ||| | || |
Sbjct 3220534 GGCGACAAGTTTGCGTCTCGTCACGGTCAAAAGGGTACGATTGGTGTGACGTACCGTCAA 3220475
Query 653715 CCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGC 653774
|| || ||||||| ||| ||| |||| ||||||||||||| |||||||||| |
Sbjct 3220474 --GAAGACATGCCGTTTACGC---GCGAGGGCATCACGCCCGACATCATCATCAACCCCC 3220420
Query 653775 ACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTGG 653834
||||||| ||||| || |||||||| | | | |||| ||| || || | ||||| |
Sbjct 3220419 ACGCCATTCCGTCTCGTATGACCATTGCCCATTTGATCGAGTGTCTTTTGAGTAAGGTTG 3220360
Query 653835 CCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTTTGGCGGCGTCACCGTNNNNNNNN 653894
|| | | ||||| | ||| |||| ||| || || || ||| || ||
Sbjct 3220359 CCACGCTCAAGGGCATGGAGGGTGACGCCACGCCCTTCACCGACGTGACAGTCGACTCGG 3220300
Query 653895 NNNNNNNNNAGTTGGCCCGCCACGGGT-GCGAGCGCTACGGCAAGGAGGTGCTCTACCAC 653953
|||| || || || | | | ||| ||| |||| | ||||||
Sbjct 3220299 TGTCTGCGCTGTTGCGCCAGCATGGATACCAATCGC-GTGGCTTCGAGGCCATGTACCAC 3220241
Query 653954 CCGCACACGGGCGAGCCCATGGAG-GC-----GTTGATCTTTTCGGCGCCGGTCTACTAC 654007
||||||||| | || | | || | || ||||| ||| || ||||||
Sbjct 3220240 GGCCACACGGGC---CGCAAGCTGCGCGCACAGGTGTTCTTT--GGC-CCCACGTACTAC 3220187
Query 654008 CAGGCCCTGCGCCACGTGGCCATCGACAAGATCCACGCCCGGCCGCGCGGCCCCGTGCAG 654067
||| ||||| ||| ||| ||||||||||||||| || |||| ||||| ||||||
Sbjct 3220186 CAGCGTCTGCGTCACATGGTGGACGACAAGATCCACGCGCGTGCGCGAGGCCCGGTGCAG 3220127
Query 654068 ATGCTCACCAAGCAGCCGGTCGAGGGCCGGTCGCGCTCGGGCGGCTTTCGCCTCGGAGAG 654127
|| | || ||||||||| ||||| || |||| || || | || ||||||||
Sbjct 3220126 ATCATGACGCGGCAGCCGGTGGAGGGTCGTGCGCGTGACGGTGGTCTGCGTTTCGGAGAG 3220067
Query 654128 ATGGAGAGT 654136
|||||| ||
Sbjct 3220066 ATGGAGCGT 3220058
>seq1
Length=4318234
Score = 140 bits (154), Expect = 5e-27
Identities = 398/603 (66%), Gaps = 13/603 (2%)
Strand=Plus/Minus
Query 2411412 GCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTT 2411471
||||||||||||| || | ||||| ||||||| ||||| | ||||||| ||| ||
Sbjct 4200993 GCTCATCTTGCCGCCC---GACAGGCCGGGCACCATGGGGTTCATCAGGTGGCAGCGGTT 4200937
Query 2411472 GCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCG 2411531
| | |||| ||| |||| | |||| ||| | | |||||||||||||||| ||| |
Sbjct 4200936 CCTGAAGCCGAGCTTGGGCATGGCGTCGTGCGACAGGCCAAAGATCTTGCGCTGATCGAG 4200877
Query 2411532 CCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTA 2411591
|||||||||| ||||||||| | ||||| || |||||| || |||||| ||||||||
Sbjct 4200876 GCCGCCAAACTCGGCGTCGACCTTGAGGTACTCCTCGTCCAGCAGCTGCATCAGCGGGTA 4200817
Query 2411592 GACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCTTGACCACCTGG---GCGGCGGCCTT 2411648
| | || | | ||| | | ||||| || | || | | ||| ||
Sbjct 4200816 CAGGCCGTCGGCCATGCACGGCTCACCCATGATCTTAACAATCTCGCTCGAGGC-GCGCA 4200758
Query 2411649 TTGCGCCGTGCCGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTCGAGCGTGTAGGC-GG 2411707
||| ||||| || | ||| |||| |||| |||||| || |||| | ||
Sbjct 4200757 GGGCGTCGTGC--ACCGACACCTTTTTGCTCAGACGCAGCAGGTCGCGCATGTACTCGGG 4200700
Query 2411708 CGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGT 2411767
|| | ||||||| ||||||||||||||| ||||| || ||| |||||| | |
Sbjct 4200699 CGTGA-GCTGGTACGAGCTGCCGCGCACAAACTCGAGGCGTGACAGGTCGACGCCGACGG 4200641
Query 2411768 GCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCAC-CGGTGCTCGACGAGGTCC 2411826
| |||| | |||| |||||| | | || | |||| ||| | | |
Sbjct 4200640 CCGTCAGCAGCGAGCGGATGATGCGCTCGTAGTA-CTGCGCGCGGTTCTCCAGCACACTC 4200582
Query 2411827 CACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGA 2411886
|||| |||| | || ||| |||||||| ||||| | |||||| | ||
Sbjct 4200581 TCGGGCGCCTTGTCGGCATCCAGGAAGGCGTGCAGATCGGCCAGCAGGATCTTGACGGTG 4200522
Query 2411887 CATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGC 2411946
|| |||||||| || || | ||||| || | | ||||| | ||| | || |||
Sbjct 4200521 CACCCGGCCTGCAGGAACTGTGCCAGCTTGATGGCCGGCACGAGGTACGCGGCGTGCGGC 4200462
Query 2411947 TTGCCCGTCGGCGCGGTGCCCCAATAAATGCAGAGAGGGCGCTCGGCCATGATGGCCTTG 2412006
||| || | || ||||||||||| |||| || |||||||| || ||| ||||
Sbjct 4200461 CGGCCGGTGGTGGCCGTGCCCCAATAGATGCTGATGTCGCGCTCGGGCAGGATCTTCTTG 4200402
Query 2412007 ATG 2412009
|||
Sbjct 4200401 ATG 4200399
>seq6
Length=1530755
Score = 93.3 bits (102), Expect = 7e-13
Identities = 99/128 (77%), Gaps = 2/128 (2%)
Strand=Plus/Minus
Query 372086 AGCGTACGACGCGCACCGGGCGCGTCTGGCCGATGCGGTGCACGCGATCGATCGCCTGCG 372145
|||| ||| |||||| |||||||| ||||| | ||||||||||| || || |||||||
Sbjct 97071 AGCGCACGGTGCGCACGGGGCGCGTTTGGCCCAGCCGGTGCACGCGGTCAATAGCCTGCG 97012
Query 372146 CCTCGGCAAACGGATTGTAGTGCGCGTCCATGAGGAGCACATAGTTGGC-GCAGACGAGG 372204
||||||| ||| ||||| |||| ||||||| | ||| | |||| | || | | |||
Sbjct 97011 CCTCGGCCGCCGGGTTGTACTGCGGCTCCATGACGTACACGTTGTTGCCGGCCGTC-AGG 96953
Query 372205 TTGAGACC 372212
||||| ||
Sbjct 96952 TTGAGCCC 96945
>seq7
Length=1169112
Score = 91.5 bits (100), Expect = 2e-12
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 2175311 GTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGAC 2175370
||||| |||||||||| || |||||||||||| ||||| ||||||||||||||||| |
Sbjct 585050 GTCGATGTCGGGGTCGTTGATCAGGCCCTTCCAGCCGACAGTCGTGCGCGGCTTTTCCAG 584991
Query 2175371 ATAGGCGCGCATGACCACCAGGAGAGCGTC 2175400
|| | ||||||||| | ||| || ||||
Sbjct 584990 GTACGAGCGCATGACAATCAGCAGCTCGTC 584961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916245123505268
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