Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq8 268 9e-67 seq4 233 2e-56 seq3 113 4e-20 seq10 96.9 3e-15 >seq8 Length=1110981 Score = 268 bits (296), Expect = 9e-67 Identities = 1128/1754 (64%), Gaps = 69/1754 (4%) Strand=Plus/Plus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT-CGCTTT 148109 |||||| ||||||||| || || || ||||| || ||||| | || | || |||| Sbjct 323606 GACTGGGACTGGTCAATAAAGGCACCGCGGTCGGCAGCCATCTGAACAACCGTACGCTG- 323664 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 | || ||||| |||||||||| ||| |||||||| |||||||| | ||| Sbjct 323665 --CGAAATTTCCCACACCGTCTTGTATAGCGCCTTGATATCCGTGGGAATGCTGCTGATA 323722 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 || | |||||| || |||| ||| | || ||| | || | | ||| Sbjct 323723 TTTTGGATGGAGCCGTTGTCGGCAATGATCCGGTTCTTCATGTTATCAGACCACAGGCCA 323782 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 || |||| ||||| | ||| | | || || ||||| ||||||||||| || || Sbjct 323783 AGGTCGACAAGGTCGCGCAGCAGCCAAGGGTTGACAACCTGGAACTCGCCGGCAAGAACA 323842 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || ||| | || | |||| || | || ||||| |||||||||| |||| |||||| Sbjct 323843 CGGCGCTGGTAAATGTTGGAAGTGTAGGGCTCAAAGCACTCGTTGTTACCCAGGATCTGC 323902 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | || | || ||||||||| || ||||| || |||||||| | |||| | | || Sbjct 323903 GACGTACTGGCAGTGGGCATGGGTGCAACCAGGAGAGAGTTGCGGACACCGTGCTGCTTA 323962 Query 148410 ATTTTGCGCTTCAGAGCCGCCCAGTCCC--AGAGCGGCGACGGTGTCACGTTCCACATGT 148467 || || ||| || | | |||||||| ||| || | || ||||| | |||||||| Sbjct 323963 ATCTTCTCCTTGAGGGAAGTCCAGTCCCAAAGATCGCTG--GGCGTCACATCCCACATGT 324020 Query 148468 CGTACTGCAGAATGCCGCGGCTAG-CGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGC 148526 | | ||||| ||||| | || || | || |||||| || | ||| | || | Sbjct 324021 CAAATTGCAGGATGCC-CTGCGAGACCGGCGAGCCCTCATAAGTAGAGTATGTGCCCTCA 324079 Query 148527 GCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGC 148586 | | || | || ||| ||||| ||| ||| || ||||| ||| ||| Sbjct 324080 GTCTGGGCAATCTCCATTGAGGCCGTCAGCGCAGCGTGGTAGATGGTCTCAAAAATCTGC 324139 Query 148587 CTGTTGAGCAGCGCCGCCGACTCG---CTTTCGTACGGCATACGCAGCCGCACAAACGCG 148643 |||| ||| | || | |||| || | ||||| ||||| || || || Sbjct 324140 TTGTTCAGC--TGACG-AGCCTCGGGAGACTCAAAAGGCATGCGCAGAGCCAGGAAGGCA 324196 Query 148644 TCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCG 148703 || || || ||||| || || || ||||| || ||||| |||||| | | || Sbjct 324197 TCAGCCAGACCCTGGACACCGACACCAATCGGGCGGTGGCGCATGTTGCTGTTGTAGGCC 324256 Query 148704 CTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTT 148763 | || || |||||||| || ||||| || || ||||| || || |||| | Sbjct 324257 TCCGTGACAGGGTAGTGGTTCACATCAATGATGCGGTTCAGGTTGCGGACAACGACCTGT 324316 Query 148764 GTAATTCTGCGCAGCAATTCAAAATCGTAC---------TTGTCATCTACGATGCATCGG 148814 || | | | ||| | |||| |||||| |||| || || | || | Sbjct 324317 GTGACTTCATGAAGCTTTCCAAAGTCGTACTCGCCCTTGTTGTAGTCAACAA---ATGAG 324373 Query 148815 TTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACG 148874 || ||| | |||||| || |||||||| || |||||| ||||| | |||||| | Sbjct 324374 GGCAGGGCAAGAGAGGCCAGGTTGCACACAGCAACCTCATCGGGGGCACAGTACTCGATA 324433 Query 148875 ATCTCGGCGCACAGATT---GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTG 148931 ||||| | |||||| || ||||| || | |||| |||||| || ||||||||| Sbjct 324434 ATCTCAGTGCACAGGTTGGAGCTGCGAATGGT---ACCCAGGTTCTTCTGGTTGCTCTTG 324490 Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991 | |||||| ||||||||| ||||| | || |||||| || ||| | |||| Sbjct 324491 CGGTTGCAGCTGTCCTTGTAAAGCATAAAGGGATTGCCAGTCTCGGTCTGGGCCTCCAGA 324550 Query 148992 AT---GAACCGATGCAGGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTG 149044 || | ||| ||| | ||| || | | ||| || || || |||| Sbjct 324551 ATGGCGTACC---ACAGCTTCTGAGCTTTGATAACCATGCGGC----CACGGCCTTCCTT 324603 Query 149045 CTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGG 149102 ||||| | ||| | ||| || ||| | ||||||||||| || | || |||||| Sbjct 324604 TTCGTACTTTTCGTACAGAGC--TTCAAACTCATCGCCGTAGCAGTCAGCCAGGCCGGGG 324661 Query 149103 CACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGA 149162 |||| || |||||||| || | ||| | ||| | | || |||||||| ||||| Sbjct 324662 CACTCGTTGGGGCACATCAGAGTCCAGTCCTCGTTCTTCTCAACACGCTTCATGAACAGG 324721 Query 149163 TCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTG 149222 ||| | ||| || || | | |||||| || ||||| || ||| Sbjct 324722 TCGCAGATCCACAGAGCCAGGAACAAGTCGCGGGCACGAACCTCTTCCTTTCCATGGTTC 324781 Query 149223 CGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGC 149282 |||||||| || | || | ||| |||||||| || || | ||| | || | Sbjct 324782 TTGCGCAGGTCAAGGAACTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAG 324841 Query 149283 GCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGA 149339 || || ||| ||||| |||||||| || | ||| || ||||||| || || || Sbjct 324842 GCACCGGGCCGCTTGTTGCCACCCTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGC 324901 Query 149340 ACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCT 149399 | |||||| |||| || ||| || ||||| || | |||| ||| || Sbjct 324902 AACATAGGAACAATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCA 324961 Query 149400 CGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AGT 149457 || | ||| ||||||| ||||||||||| ||| | ||| ||||| || | ||| Sbjct 324962 CGAATGCGGTGGACGTTGAGACCGATGCCGCCAGCCAT-CTTGGAGATCATAGCACAAGT 325020 Query 149458 CGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACG 149517 | ||| || ||| |||||||| ||||||||| ||||||| | |||||||| | Sbjct 325021 C-TTGAGGGTATCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGACTAGAAAGCATG 325079 Query 149518 AGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAA-A 149576 | ||| || | | | || ||||| ||| | ||||| || || ||||| | Sbjct 325080 AAGACAGCTGGGCCTGAGGGGTACCGGCGTTGAAGAGAGTGGGAGACGCATGGGTAAAGA 325139 Query 149577 TATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCA---TGTCATCGCCATGG 149633 || || | ||| | | ||| | |||||| || || |||| ||||| | ||| Sbjct 325140 ACTTGCTCG-ACATGAGGTTGTAAGTCTCGAGAACACGCTCCACATTGTCA-CCCCA--A 325195 Query 149634 ATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATT 149693 ||||| | ||| || ||||| | ||| ||||| || ||||| | | ||| | | Sbjct 325196 ATGCCGACGGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAGC 325255 Query 149694 TTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGG 149753 || |||| |||| | || || |||||| |||||||||||| ||||| ||||| ||| Sbjct 325256 TTAAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGG 325315 Query 149754 CCGTGGTCAATGGC 149767 ||| ||||||| Sbjct 325316 TCGTACACAATGGC 325329 Score = 107 bits (118), Expect = 2e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | ||||| |||||||||| Sbjct 478912 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 478970 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || || ||||| |||||||| |||||| || Sbjct 478971 CAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 479030 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | |||||| | | ||| || || | ||| | ||| || || ||||| | Sbjct 479031 TGACGTTGTCGATCGTGTCCGAAGACTCGACCTCTAGGGTAATGGTCTTACCCGTCAGGG 479090 Query 133642 TTTTTACGAAA 133652 | || |||||| Sbjct 479091 TCTTGACGAAA 479101 >seq4 Length=2525909 Score = 233 bits (258), Expect = 2e-56 Identities = 376/523 (72%), Gaps = 23/523 (4%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||| ||||| ||||| ||||| || ||||| || ||||| | | ||| ||||| | ||| Sbjct 2287327 GTAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCAT 2287268 Query 120414 AAACTCGAACGGGTTGCT--CGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGT 120471 ||| || || |||||| | |||| || | ||||| | || | |||||||| Sbjct 2287267 AAAGTCAAAGGGGTTGGTGGCGCGGTAGACCTTTTCGTTT--CCGAGGGCGACGAGCAGG 2287210 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCC 120531 ||||| || || ||||||||||||| |||| | ||||||||||| || | ||| Sbjct 2287209 CGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGGAG-GCC 2287151 Query 120532 ACCGG-CAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG-G 120589 || || || ||| || | ||||||||||||||| | || || || ||| || | Sbjct 2287150 ACAGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGCATCGGTGATGATCTG 2287091 Query 120590 CGAGCATAG-TG-TGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGC 120647 | | ||| || | || ||| |||| | | |||| | | | || ||||||| Sbjct 2287090 CTCGACTAGCTGCTTGCTGGGGCGGTTGT-TGAGGTGCGAGAACAGCAG-ACAGGCA--- 2287036 Query 120648 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGG 120707 ||||| ||||||||||||||||| ||||| |||||||||||| || |||||||| || Sbjct 2287035 -AAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGG 2286977 Query 120708 CATGATGCCTTTCGTCTTG---ATGTAGAATATGGCGGC-AAAGCTGCCCGAAAAGAACA 120763 ||||| ||| || |||| | |||| |||| ||| ||||| |||||| ||||| | Sbjct 2286976 CATGAGGCCG--CG-CTTGCGCAGCCAGAAGATGGAGGCGAAAGC-GCCCGAGAAGAAGA 2286921 Query 120764 CGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGA 120823 |||||| ||| |||||||||||||| ||||| ||| || |||| | |||| | || Sbjct 2286920 TGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGGTCGACTCCTTGTCGGTGA 2286861 Query 120824 TCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 ||||||| | |||||| |||||||| ||| | |||||| || Sbjct 2286860 TCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCACGGGAT 2286818 >seq3 Length=3916844 Score = 113 bits (124), Expect = 4e-20 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| | || | | | ||||| |||||||| || Sbjct 1905467 GTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCA-TCCTCAAGCTGCTTTCC 1905525 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| ||||||||||| |||||||| |||||| ||| Sbjct 1905526 AGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 1905585 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 || | || | |||||||| | ||||| || | ||||| ||| |||||||||| Sbjct 1905586 GACATTGTCGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 1905641 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| || | ||| ||| | ||||| ||||||||||| Sbjct 1904954 GTAGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGACCA-TCCTCAAGCTGCTTGCC 1905012 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1905013 AGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGGACTT 1905072 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || || | || ||| || |||| || | ||| || || ||||| || Sbjct 1905073 GACGTTGTCAATGGTATCAGAGGACTCGACTTCGAGAGTTATGGTCTTTCCAGTCAGGGT 1905132 Query 133643 TTTTACGA 133650 || |||| Sbjct 1905133 CTTGACGA 1905140 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||| ||| | || | | | ||||| |||||||| || Sbjct 1905239 GTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCA-TCCTCAAGCTGCTTTCC 1905297 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1905298 AGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 1905357 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||||| | ||| || |||| |||| ||| || || ||||| || Sbjct 1905358 GACGTTGTCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATGGTCTTTCCAGTCAGGGT 1905417 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 1905418 CTTGACGAAGATTTGCAT 1905435 >seq10 Length=988720 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| |||||||| || ||| | || || ||||||||||| || || ||||| ||||| Sbjct 887181 GTCCTCCAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 887240 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||||| | || | ||||| | || ||| || |||| ||| | Sbjct 887241 GTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAAT 887300 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || |||||||||||||| Sbjct 887301 CGTCTTACCCGTAAGGGTCTTGACGAAAATCTGCAT 887336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420727486880