Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 >seq2 Length=3936381 Score = 100 bits (110), Expect = 3e-16 Identities = 276/422 (65%), Gaps = 37/422 (9%) Strand=Plus/Plus Query 147006 CATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCC 147065 ||||| || ||||| ||||| ||| ||||||||||| || |||||||||||||| | Sbjct 849985 CATGTGTGTAAGCAGAGAGTACGAGGCAATGTTGAAGGGTACACCCAGGCCCATGTCGCA 850044 Query 147066 CGACCTCTGGTACAGCTGGCA---CGAGAG---------------CTCCCCGTCG----- 147102 ||||| ||||| | |||||| | | | ||| || || Sbjct 850045 CGACCGTTGGTAGAACTGGCAGTGCAAATGGCCTTTGGGCTTTTCCTCGCCCTCCTTTGC 850104 Query 147103 GCC----------ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGG 147152 ||| ||||| |||||| | || || ||||||||||| ||||| Sbjct 850105 GCCGGGATATGAAACGTAGAACTGGGCAAACATATGACACGGCGGCAGGGCCATCTTCTT 850164 Query 147153 CAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAA 147211 ||||| ||||||||||| || | | | |||| | || | || || |||| | Sbjct 850165 TAGGTCTGCGGGGTTCCACGCGCTCATTATAATGCGCC-GATCGTACGGATTGGTCTTGA 850223 Query 147212 TCTCTTCGATAACC-CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAG 147270 || | ||| ||| | || |||||||| || || | |||| ||||| || | | Sbjct 850224 GCTTGTGGATGACCTCGGCT-AGCTGGTCGACACCTTTGCCCGTGTAGTCCGTTTTGGCG 850282 Query 147271 TCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCG 147330 || |||||| ||| ||||| || | ||| |||||||||||||| || |||||||| ||| Sbjct 850283 TCTACGTACTCGGCGCCAAAATGGCGCCATTGGAAGCCGTACACGGGGCCCAGGTCTCCG 850342 Query 147331 GGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAG 147390 || | ||| || |||| | | | ||||||||| | || |||| | | |||||| Sbjct 850343 ACCTCGCGGTGGCCGAGGCCCACGCTGTCGAGAAACTCCCGCGAGCCGTTGCCATCCCAG 850402 Query 147391 AT 147392 || Sbjct 850403 AT 850404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487912476800