Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq4 268 1e-65
seq8 185 1e-40
seq2 150 3e-30
>seq4
Length=2525909
Score = 268 bits (296), Expect = 1e-65
Identities = 375/515 (73%), Gaps = 16/515 (3%)
Strand=Plus/Plus
Query 1455769 CCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGG 1455828
|| || ||| ||| | |||||| || ||||||||||| ||||| ||||| ||||||||
Sbjct 2286478 CCCGCAGATCTGGCAGATGTAC-AAGAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAAA 2286536
Query 1455829 TCGACCTCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATT 1455885
| ||||| | ||| | ||||| ||| ||| | | || || | | |
Sbjct 2286537 TTGACCTGTCCAAGGACCTTCACGACTGGAACAACCGCCTGAACAAGGATGAACAGTACT 2286596
Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945
||||| |||| |||||||||| || |||||| ||| |||||||| |||||||||
Sbjct 2286597 TCATCTCGCACATCCTCGCCTTCTT-CGCCGCATCCGACGGCATCGTCAACGAGAACCTC 2286655
Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005
| || || || |||||||| | || ||||| || | || ||||| ||||||
Sbjct 2286656 GTCGAGCGTTTCTCCGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAG 2286715
Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065
||| || || ||||||||||| || || |||||||| ||||||||||| ||| |||||
Sbjct 2286716 ATCATGATGGAGAACATCCACTCCGAGACGTACTCGCTGCTGATCGACACTTACATCAAG 2286775
Query 1456066 GACCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAA 1456124
|| || ||| | ||| ||||||| ||||||||| || | |||| | |
Sbjct 2286776 GAGCC-CTCGCAGCGCACCTACCTCTTCAACGCCATCGATACCATCCCGTGCATCCGCCG 2286834
Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAG 1456181
|||||||||||||| | |||||||||| |||||||| ||||| ||||||| ||
Sbjct 2286835 CAAGGCCGACTGGGCCCTCAAGTGGATCACCGACAAGGAG----TCGAC-CTTTGCCCAG 2286889
Query 1456182 CGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATC 1456240
|| || |||| |||||||| ||||||||||||||| ||||||||| |||| | |||||
Sbjct 2286890 CGCCTGGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTTTCGCCTCCATC 2286949
Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|| ||||| ||||||||||||||||| || ||
Sbjct 2286950 TTCTGGCTGCGCAAGCGCGGCCTCATGCCTGGCCT 2286984
Score = 168 bits (186), Expect = 1e-35
Identities = 239/327 (73%), Gaps = 12/327 (4%)
Strand=Plus/Plus
Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511
||||| ||||||||||||||||| | | || | | ||||||| | | | | |
Sbjct 2287023 TGCACACCGACTTTGCCTGTCTGCTGTTCTCG---CACCTCAACAACCGCCCCAGCAAGC 2287079
Query 1456512 TGCC---CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568
|| | ||||||||||| ||| || |||| || ||||| ||||| | | ||||
Sbjct 2287080 AGCTAGTCGAGCAGATCATCACCGATGCTGTCGTCATTGAGAAGGAGTTCCTGACCGAGG 2287139
Query 1456569 CGCTG-CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATT 1456627
| ||| || ||||| ||| |||||||||||||| | |||||| |||||||||| | |
Sbjct 2287140 CCCTGCCCTGTGGC-CTCCTCGGCATGAACGCCGAC-CTCATGAAGCAGTACATTG-AGT 2287196
Query 1456628 TTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAAC 1456687
| ||||||||||||||||||| || ||||| | || ||| |||||| | |||||
Sbjct 2287197 TCGTCGCCGACCGCCTGCTCGTCGCCCTCGGAAAC-GAAAAGGTCTACCGCGCCACCAAC 2287255
Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747
|| || | |||||| |||||||||| |||||||||||||| |||||| |||
Sbjct 2287256 CCCTTTGACTTTATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGC 2287315
Query 1456748 GT-GGCGAGTACGCCAAGGCCGGCGTC 1456773
|| ||||| ||| ||||||||||||
Sbjct 2287316 GTGGGCGACTACCAAAAGGCCGGCGTC 2287342
>seq8
Length=1110981
Score = 185 bits (204), Expect = 1e-40
Identities = 346/503 (69%), Gaps = 19/503 (4%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||| | || || ||||||| ||| ||| ||||| |||| |||||||
Sbjct 325350 CACAAGGAAGAGCTGGATTCTGCCATTGTGTACGACCGTGACTTCAACTACCAGTACTTT 325291
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800
|| | |||| || || ||||||||| | ||| || || | | ||||||||
Sbjct 325290 GGCTTCAAGACCCTGGAGCGCTCCTACCTG-CTTAAGCTCGACGGCAAGATTGTCGAGCG 325232
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
|||||| | ||| | |||||||| ||| | ||| ||| |||| |||||
Sbjct 325231 TCCCCAGCACATGATTATGCGTGTTGCCGTCGGC-ATTTGGGGT-----------GACAA 325184
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919
|| |||||| || |||| || ||| | ||||||| |||| ||| || ||| |
Sbjct 325183 TG---TGGAGCGTGTTCTCGAGACTTACAACCTCATGTCG-AGCAAGTTCTTTACCCATG 325128
Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979
|| | ||||| ||||| || ||||| || || | | ||| || || ||||||||
Sbjct 325127 CGTCTCCCACTCTCTTCAACGCCGGTACCCCTCAGGCCCAGCTGTCTTCATGCTTTCTAG 325068
Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039
| |||||||||| ||| || |||||||| || || || |||||| || || | |
Sbjct 325067 TCGACATGAAGGACGACAGCATTGAGGGCATTTACGATACCCTCAAGACTTGTGCTATGA 325008
Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099
|||||||| ||| |||||||||||| | || ||| | || ||| | ||| |||
Sbjct 325007 TCTCCAAGATGGCTGGCGGCATCGGTCTCAACGTCCACCGCATTCGTGCCACTGGCTCCT 324948
Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159
|| | || ||||||||||| |||||||| |||| || ||| | || || || |||
Sbjct 324947 ACATTGCCGGCACCAACGGTACCTCCAACGGTATTGTTCCTATGTTGCGTGTCTTCAACA 324888
Query 260160 ACACGGCGCGCTACGTCGACCAG 260182
||||||| ||||| || ||||||
Sbjct 324887 ACACGGCCCGCTATGTTGACCAG 324865
Score = 89.7 bits (98), Expect = 7e-12
Identities = 125/172 (73%), Gaps = 4/172 (2%)
Strand=Plus/Minus
Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156
|||| |||||| | | |||||| | |||||| |||| |||| ||| | |||||||||
Sbjct 324561 TGGTACGCCATTCTGGAGGCCCAGACCGAGACTGGCAATCCCTTTATGCTTTACAAGGAC 324502
Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCTGT 262214
| ||||| | ||||||||| |||||||||| |||| || ||| |||||||||
Sbjct 324501 AGCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCG-CAGCT-CCAACCTGT 324444
Query 262215 GCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT 262266
|||| ||||| || ||| | | ||| |||| ||||||||||||
Sbjct 324443 GCACTGAGATTATCGAGTACTGTGCCCCCGATGAGGTTGCTGTGTGCAACCT 324392
>seq2
Length=3936381
Score = 150 bits (166), Expect = 3e-30
Identities = 209/293 (71%), Gaps = 0/293 (0%)
Strand=Plus/Minus
Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869
||||||||||| ||| || | ||||||| | || || |||| || |||||
Sbjct 3665143 ACCTTTTCGGCCTCGATGATTTGCAGCAGGCGCTTGATGACCTGTTCGTCGGTCAGGCGG 3665084
Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929
|| ||||||||||||| || || |||||| | |||||||| | | ||| |||
Sbjct 3665083 CCATAGCGCAGGATGGCGCAGCGCGACTGCAGTGGCTCGATGATCTTGTTGGACTGGTTA 3665024
Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989
||||| | |||||| ||||| || |||| | |||||||||| || ||||| |||
Sbjct 3665023 CAGGCAAAGGCAAAGCGCGTGGTGTTGGAGTAGATTTCCATGGTGCGTCGCAGGGCTTGT 3664964
Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGC 333049
||||| ||| || | | ||||||| |||||||||||||||| ||| ||||| ||| |
Sbjct 3664963 TGGGCGCCCGAGGTCATGGAGTCGGCTTCGTCGAGGATGATGAGCTTATGGCGGCCGGGG 3664904
Query 333050 GGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102
|| || ||| ||||| ||| | ||||||| ||||| ||||||||
Sbjct 3664903 GGGAGGGTGACCTTTTTCTGGGCAAAGGTTTTGATGCGGTTGCGAACGACGTC 3664851
Score = 105 bits (116), Expect = 1e-16
Identities = 323/488 (66%), Gaps = 25/488 (5%)
Strand=Plus/Plus
Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317
|||||||||||| | || | || || |||| || ||||| ||||||||| ||
Sbjct 3220061 CTCCATCTCTCCGAAACGCAGACCACCGTCACGCGCACGACCCTCCACCGGCTGCCGCGT 3220120
Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGCAG 1600377
| ||||| || ||||| || | || ||||| ||||||||| ||| ||| |||||
Sbjct 3220121 CATGATCTGCACCGGGCCTCGCGCACGCGCGTGGATCTTGTCGTCCACCATGTGACGCAG 3220180
Query 1600378 GGCCTGGTAGTAGACCGGCGCCGTAAAGATCAAC-----GC-CTCCATGGGCTCGCCGGT 1600431
||||||||| || ||| ||||| || | || | | || | ||| ||
Sbjct 3220181 ACGCTGGTAGTACGTGGG-GCC--AAAGAACACCTGTGCGCGCAGCTTGCG---GCCCGT 3220234
Query 1600432 GTGCGGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGC-ATCCGTGGCGAGCCAACTCGG 1600490
||| |||||| | |||| ||| ||| | | |||| || | |||| |
Sbjct 3220235 GTGGCCGTGGTACATGGCCTCGAAGCCAC-GCGATTGGTATCCATGCTGGCGCAACA--G 3220291
Query 1600491 CGGCGACATCG--TCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTC 1600548
|| |||| || ||||| || ||| || ||||||||| |||| ||| | |||||
Sbjct 3220292 CGCAGACACCGAGTCGACTGTCACGTCGGTGAAGGGCGTGGCGTCACCCTCCATGCCCTT 3220351
Query 1600549 GCGGCAGGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGG 1600608
| | ||| ||||| | || || ||| |||| | | | |||||||| || |||||
Sbjct 3220352 GAGCGTGGCAACCTTACTCAAAAGACACTCGATCAAATGGGCAATGGTCATACGAGACGG 3220411
Query 1600609 GATGGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCAT 1600668
|||||||| |||||||| | |||||||||||| || ||| ||| | |||||
Sbjct 3220412 AATGGCGTGGGGGTTGATGATGATGTCGGGCGTGATGCCCTCGC---GCGTAAACGGCAT 3220468
Query 1600669 GTCCTCGGTGGAGCGCACG--CTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGT 1600726
||| || | || | ||| || | || |||||||| ||||| || |||| |
Sbjct 3220469 GTCTTC--TTGACGGTACGTCACACCAATCGTACCCTTTTGACCGTGACGAGACGCAAAC 3220526
Query 1600727 TTGTCGCC 1600734
||||||||
Sbjct 3220527 TTGTCGCC 3220534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177810042577944
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