Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 268 1e-65 seq8 185 1e-40 seq2 150 3e-30 >seq4 Length=2525909 Score = 268 bits (296), Expect = 1e-65 Identities = 375/515 (73%), Gaps = 16/515 (3%) Strand=Plus/Plus Query 1455769 CCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGG 1455828 || || ||| ||| | |||||| || ||||||||||| ||||| ||||| |||||||| Sbjct 2286478 CCCGCAGATCTGGCAGATGTAC-AAGAAGGCCGAGGCGTCCTTCTGGACTGCCGAGGAAA 2286536 Query 1455829 TCGACCTCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATT 1455885 | ||||| | ||| | ||||| ||| ||| | | || || | | | Sbjct 2286537 TTGACCTGTCCAAGGACCTTCACGACTGGAACAACCGCCTGAACAAGGATGAACAGTACT 2286596 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 ||||| |||| |||||||||| || |||||| ||| |||||||| ||||||||| Sbjct 2286597 TCATCTCGCACATCCTCGCCTTCTT-CGCCGCATCCGACGGCATCGTCAACGAGAACCTC 2286655 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 | || || || |||||||| | || ||||| || | || ||||| |||||| Sbjct 2286656 GTCGAGCGTTTCTCCGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAG 2286715 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 ||| || || ||||||||||| || || |||||||| ||||||||||| ||| ||||| Sbjct 2286716 ATCATGATGGAGAACATCCACTCCGAGACGTACTCGCTGCTGATCGACACTTACATCAAG 2286775 Query 1456066 GACCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAA 1456124 || || ||| | ||| ||||||| ||||||||| || | |||| | | Sbjct 2286776 GAGCC-CTCGCAGCGCACCTACCTCTTCAACGCCATCGATACCATCCCGTGCATCCGCCG 2286834 Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 |||||||||||||| | |||||||||| |||||||| ||||| ||||||| || Sbjct 2286835 CAAGGCCGACTGGGCCCTCAAGTGGATCACCGACAAGGAG----TCGAC-CTTTGCCCAG 2286889 Query 1456182 CGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATC 1456240 || || |||| |||||||| ||||||||||||||| ||||||||| |||| | ||||| Sbjct 2286890 CGCCTGGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTTTCGCCTCCATC 2286949 Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || ||||| ||||||||||||||||| || || Sbjct 2286950 TTCTGGCTGCGCAAGCGCGGCCTCATGCCTGGCCT 2286984 Score = 168 bits (186), Expect = 1e-35 Identities = 239/327 (73%), Gaps = 12/327 (4%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||||||||||||||| | | || | | ||||||| | | | | | Sbjct 2287023 TGCACACCGACTTTGCCTGTCTGCTGTTCTCG---CACCTCAACAACCGCCCCAGCAAGC 2287079 Query 1456512 TGCC---CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568 || | ||||||||||| ||| || |||| || ||||| ||||| | | |||| Sbjct 2287080 AGCTAGTCGAGCAGATCATCACCGATGCTGTCGTCATTGAGAAGGAGTTCCTGACCGAGG 2287139 Query 1456569 CGCTG-CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATT 1456627 | ||| || ||||| ||| |||||||||||||| | |||||| |||||||||| | | Sbjct 2287140 CCCTGCCCTGTGGC-CTCCTCGGCATGAACGCCGAC-CTCATGAAGCAGTACATTG-AGT 2287196 Query 1456628 TTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAAC 1456687 | ||||||||||||||||||| || ||||| | || ||| |||||| | ||||| Sbjct 2287197 TCGTCGCCGACCGCCTGCTCGTCGCCCTCGGAAAC-GAAAAGGTCTACCGCGCCACCAAC 2287255 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747 || || | |||||| |||||||||| |||||||||||||| |||||| ||| Sbjct 2287256 CCCTTTGACTTTATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGC 2287315 Query 1456748 GT-GGCGAGTACGCCAAGGCCGGCGTC 1456773 || ||||| ||| |||||||||||| Sbjct 2287316 GTGGGCGACTACCAAAAGGCCGGCGTC 2287342 >seq8 Length=1110981 Score = 185 bits (204), Expect = 1e-40 Identities = 346/503 (69%), Gaps = 19/503 (4%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | || || ||||||| ||| ||| ||||| |||| ||||||| Sbjct 325350 CACAAGGAAGAGCTGGATTCTGCCATTGTGTACGACCGTGACTTCAACTACCAGTACTTT 325291 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800 || | |||| || || ||||||||| | ||| || || | | |||||||| Sbjct 325290 GGCTTCAAGACCCTGGAGCGCTCCTACCTG-CTTAAGCTCGACGGCAAGATTGTCGAGCG 325232 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| | |||||||| ||| | ||| ||| |||| ||||| Sbjct 325231 TCCCCAGCACATGATTATGCGTGTTGCCGTCGGC-ATTTGGGGT-----------GACAA 325184 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919 || |||||| || |||| || ||| | ||||||| |||| ||| || ||| | Sbjct 325183 TG---TGGAGCGTGTTCTCGAGACTTACAACCTCATGTCG-AGCAAGTTCTTTACCCATG 325128 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 || | ||||| ||||| || ||||| || || | | ||| || || |||||||| Sbjct 325127 CGTCTCCCACTCTCTTCAACGCCGGTACCCCTCAGGCCCAGCTGTCTTCATGCTTTCTAG 325068 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 | |||||||||| ||| || |||||||| || || || |||||| || || | | Sbjct 325067 TCGACATGAAGGACGACAGCATTGAGGGCATTTACGATACCCTCAAGACTTGTGCTATGA 325008 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 |||||||| ||| |||||||||||| | || ||| | || ||| | ||| ||| Sbjct 325007 TCTCCAAGATGGCTGGCGGCATCGGTCTCAACGTCCACCGCATTCGTGCCACTGGCTCCT 324948 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | || ||||||||||| |||||||| |||| || ||| | || || || ||| Sbjct 324947 ACATTGCCGGCACCAACGGTACCTCCAACGGTATTGTTCCTATGTTGCGTGTCTTCAACA 324888 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 ||||||| ||||| || |||||| Sbjct 324887 ACACGGCCCGCTATGTTGACCAG 324865 Score = 89.7 bits (98), Expect = 7e-12 Identities = 125/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| |||||| | | |||||| | |||||| |||| |||| ||| | ||||||||| Sbjct 324561 TGGTACGCCATTCTGGAGGCCCAGACCGAGACTGGCAATCCCTTTATGCTTTACAAGGAC 324502 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCTGT 262214 | ||||| | ||||||||| |||||||||| |||| || ||| ||||||||| Sbjct 324501 AGCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCG-CAGCT-CCAACCTGT 324444 Query 262215 GCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT 262266 |||| ||||| || ||| | | ||| |||| |||||||||||| Sbjct 324443 GCACTGAGATTATCGAGTACTGTGCCCCCGATGAGGTTGCTGTGTGCAACCT 324392 >seq2 Length=3936381 Score = 150 bits (166), Expect = 3e-30 Identities = 209/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869 ||||||||||| ||| || | ||||||| | || || |||| || ||||| Sbjct 3665143 ACCTTTTCGGCCTCGATGATTTGCAGCAGGCGCTTGATGACCTGTTCGTCGGTCAGGCGG 3665084 Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929 || ||||||||||||| || || |||||| | |||||||| | | ||| ||| Sbjct 3665083 CCATAGCGCAGGATGGCGCAGCGCGACTGCAGTGGCTCGATGATCTTGTTGGACTGGTTA 3665024 Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989 ||||| | |||||| ||||| || |||| | |||||||||| || ||||| ||| Sbjct 3665023 CAGGCAAAGGCAAAGCGCGTGGTGTTGGAGTAGATTTCCATGGTGCGTCGCAGGGCTTGT 3664964 Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGC 333049 ||||| ||| || | | ||||||| |||||||||||||||| ||| ||||| ||| | Sbjct 3664963 TGGGCGCCCGAGGTCATGGAGTCGGCTTCGTCGAGGATGATGAGCTTATGGCGGCCGGGG 3664904 Query 333050 GGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102 || || ||| ||||| ||| | ||||||| ||||| |||||||| Sbjct 3664903 GGGAGGGTGACCTTTTTCTGGGCAAAGGTTTTGATGCGGTTGCGAACGACGTC 3664851 Score = 105 bits (116), Expect = 1e-16 Identities = 323/488 (66%), Gaps = 25/488 (5%) Strand=Plus/Plus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 |||||||||||| | || | || || |||| || ||||| ||||||||| || Sbjct 3220061 CTCCATCTCTCCGAAACGCAGACCACCGTCACGCGCACGACCCTCCACCGGCTGCCGCGT 3220120 Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGCAG 1600377 | ||||| || ||||| || | || ||||| ||||||||| ||| ||| ||||| Sbjct 3220121 CATGATCTGCACCGGGCCTCGCGCACGCGCGTGGATCTTGTCGTCCACCATGTGACGCAG 3220180 Query 1600378 GGCCTGGTAGTAGACCGGCGCCGTAAAGATCAAC-----GC-CTCCATGGGCTCGCCGGT 1600431 ||||||||| || ||| ||||| || | || | | || | ||| || Sbjct 3220181 ACGCTGGTAGTACGTGGG-GCC--AAAGAACACCTGTGCGCGCAGCTTGCG---GCCCGT 3220234 Query 1600432 GTGCGGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGC-ATCCGTGGCGAGCCAACTCGG 1600490 ||| |||||| | |||| ||| ||| | | |||| || | |||| | Sbjct 3220235 GTGGCCGTGGTACATGGCCTCGAAGCCAC-GCGATTGGTATCCATGCTGGCGCAACA--G 3220291 Query 1600491 CGGCGACATCG--TCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTC 1600548 || |||| || ||||| || ||| || ||||||||| |||| ||| | ||||| Sbjct 3220292 CGCAGACACCGAGTCGACTGTCACGTCGGTGAAGGGCGTGGCGTCACCCTCCATGCCCTT 3220351 Query 1600549 GCGGCAGGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGG 1600608 | | ||| ||||| | || || ||| |||| | | | |||||||| || ||||| Sbjct 3220352 GAGCGTGGCAACCTTACTCAAAAGACACTCGATCAAATGGGCAATGGTCATACGAGACGG 3220411 Query 1600609 GATGGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCAT 1600668 |||||||| |||||||| | |||||||||||| || ||| ||| | ||||| Sbjct 3220412 AATGGCGTGGGGGTTGATGATGATGTCGGGCGTGATGCCCTCGC---GCGTAAACGGCAT 3220468 Query 1600669 GTCCTCGGTGGAGCGCACG--CTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGT 1600726 ||| || | || | ||| || | || |||||||| ||||| || |||| | Sbjct 3220469 GTCTTC--TTGACGGTACGTCACACCAATCGTACCCTTTTGACCGTGACGAGACGCAAAC 3220526 Query 1600727 TTGTCGCC 1600734 |||||||| Sbjct 3220527 TTGTCGCC 3220534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177810042577944