Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq10 113 4e-20
seq3 111 1e-19
seq8 109 5e-19
>seq10
Length=988720
Score = 113 bits (124), Expect = 4e-20
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| || | || ||| || |||| |||||||||||||| || || |
Sbjct 887147 CCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGA 887206
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||| ||||||||||||| |||| || |||||||||| ||||| ||| | | |
Sbjct 887207 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 887266
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||| || || ||||| | || ||||| |||||||| | || || || |
Sbjct 887267 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 887326
Query 35727 ATATCTGCAT 35736
| ||||||||
Sbjct 887327 AAATCTGCAT 887336
>seq3
Length=3916844
Score = 111 bits (122), Expect = 1e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||||||||||||||| |||| | ||| || | || || |||||||| || |||||
Sbjct 1905244 CTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAA 1905303
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||||| || | || |||||||||| |||||| ||| | ||
Sbjct 1905304 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1905362
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||||| || || || || | ||||| || || || |||| || || |
Sbjct 1905363 TGTCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGA 1905422
Query 35724 CAAATATCTGCAT 35736
| || || |||||
Sbjct 1905423 CGAAGATTTGCAT 1905435
Score = 104 bits (114), Expect = 2e-17
Identities = 125/170 (74%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || |||||||| |||| | ||| || | || || |||||||| || |||||
Sbjct 1905472 CTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAA 1905531
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||||| ||| | || |||||||||| |||||| ||| | | |
Sbjct 1905532 GATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 1905591
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714
| | ||||||| | ||||||||| | ||||| || || || ||||
Sbjct 1905592 GTCGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 1905641
>seq8
Length=1110981
Score = 109 bits (120), Expect = 5e-19
Identities = 136/184 (74%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || ||| || | || || |||||||| || |||||
Sbjct 478918 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 478977
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||||| |||| || |||||||||| |||||| ||| | ||
Sbjct 478978 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 479036
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || || ||||| | || || || |||||||||| || || |
Sbjct 479037 TGTCGATCGTGTCCGAAGACTCGACCTCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGA 479096
Query 35724 CAAA 35727
| ||
Sbjct 479097 CGAA 479100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793532380960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |