Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 4e-14 seq3 93.3 4e-14 >seq8 Length=1110981 Score = 93.3 bits (102), Expect = 4e-14 Identities = 199/294 (68%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 131741 AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGC--- 131797 || || || | ||| || ||||||||||||| || | || | || || ||| Sbjct 324797 AACTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACCGGGCCGCTTG 324856 Query 131798 TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAA 131857 || || || || | ||||| || || |||||||| | || |||||||| || | | | Sbjct 324857 TTGCCACCCTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACATAGGAACAATA 324916 Query 131858 CCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACG 131917 ||||||| | | || ||||||| ||||||| |||| |||| | || ||| ||| Sbjct 324917 CCGTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGGACG 324976 Query 131918 TTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATA 131976 ||||| || || || || ||| | || ||||| | || || | | || || | || Sbjct 324977 TTGAGACCGATGCCGCCAGCCAT-CTTGGAGATCATAGCACAAGTCTTGAGGGTATCGTA 325035 Query 131977 GATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTG 132030 || || || | |||||| | |||||||||| |||||| || |||| ||| Sbjct 325036 AATGCCCTCAATGCTGTCGTCCTTCATGTCGACTAGAAAGCATGAAGACAGCTG 325089 >seq3 Length=3916844 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 |||||| |||| |||| |||| ||| | ||||| || || || || |||||||| Sbjct 1904923 GCCTCCACGCAGACGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGA 1904982 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | || || ||||| || || ||| ||||||||||||| || ||||| || Sbjct 1904983 GAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 1905042 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| || | | | || | || || | || || || Sbjct 1905043 GATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTATCAGAGGACTCGAC 1905102 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCAC 27235 ||| |||||||| | || || ||||| || || || Sbjct 1905103 TTCGAGAGTTATGGTCTTTCCAGTCAGGGTCTTGAC 1905138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | || | ||| | || || || |||||||| ||||||||| Sbjct 1905209 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 1905268 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | || || ||||| || || || | || || ||||| || ||||| || Sbjct 1905269 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 1905328 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | | || | ||||| | | || ||| Sbjct 1905329 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGACT 1905388 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || || ||||| || || || |||||||||||| Sbjct 1905389 TCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCATA 1905436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934337853344