Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4 125 2e-23 >seq4 Length=2525909 Score = 125 bits (138), Expect = 2e-23 Identities = 349/524 (67%), Gaps = 11/524 (2%) Strand=Plus/Plus Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACT-ATCTAGCCATGA 443407 ||||| ||||| || ||||||||| | ||| |||||| | || || | | || |||| Sbjct 2286530 GAGGAAATTGACCTGTCCAAGGACCTTCACGACTGGAACAACCGCCTGAACAAGG-ATGA 2286588 Query 443408 ACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGA 443467 || | ||| || |||| | |||||||| || | |||||| |||||| || Sbjct 2286589 ACAGTACTTCATCTCGCACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGA 2286648 Query 443468 GAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTACGC 443527 ||| || || |||||||| || ||| | | |||||||||||| |||||||| Sbjct 2286649 GAACCTCGTCGAGCGTTTCTCCGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGG 2286708 Query 443528 GTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACT 443587 ||||| | ||||||||||| ||| ||||| ||| | | ||||| |||||| Sbjct 2286709 CTTCCAGATCATGATGGAGAACATCCACTCCGAGACGTACTCGCTGCTGATC--GACACT 2286766 Query 443588 AATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGT--TCATGACCACGCCAGG 443644 | | || || | ||||| || | ||| || || || |||| || | Sbjct 2286767 TACATC-AAGGAGCCCTCGCAGCGCACCTACCTCTTCAACGCCATCGATACCATCCCGTG 2286825 Query 443645 CATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTC-AGCTTCG 443703 |||| ||| | |||||| ||||| || | ||| || || | ||| | Sbjct 2286826 CATCCGCCGCAAGGCCGACTGGGCCCTCAAGTGGATC-ACCGACAAGGAGTCGACCTTTG 2286884 Query 443704 TCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCC 443763 | |||| || ||||| ||||| | ||||| || | || || ||| ||||| ||| Sbjct 2286885 CCCAGCGCCTGGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGC-GCTTTCGCC 2286943 Query 443764 TCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTG 443823 |||||||||||| || ||||| || || |||| || |||||||| ||||| ||| Sbjct 2286944 TCCATCTTCTGGCTGCGCAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTG 2287003 Query 443824 ATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||| || |||||||| |||| |||||| |||||||| || Sbjct 2287004 ATCTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGTCTGCT 2287047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335755793340