Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq8 114 2e-20 >seq8 Length=1110981 Score = 114 bits (126), Expect = 2e-20 Identities = 685/1084 (63%), Gaps = 33/1084 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||| | ||||| || |||||||| || || ||||||| ||| || | || Sbjct 323850 GGTAAATGTTGGAAGTGTAGGGCTCAAAGCACTCGTTGTTACCCAGGATCTGCGACGTAC 323909 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| ||||| | || ||| ||| || | ||| | || ||| || | Sbjct 323910 TGGCAGTGGGCATGGGTGCAACCAGGAGAGAGTTGCGGACACCGTGCTGCTTAATCTTCT 323969 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGA--GCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 ||||||| | |||||| | || ||| || |||| | ||||||||||||| || Sbjct 323970 CCTTGAGGGAAGTCCAGTCCCAAA-GATCGCTGGGCGTCACAT-CCCACATGTCAAATTG 324027 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 || | || || || | || || |||||| | || || | || | | | || Sbjct 324028 CAGGATGCCCTGCGAGACCGGCGAGCCCTCATAAGTAGAGTATGTGCCCTCAGTCTGGGC 324087 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | || ||| ||| | ||||| || ||||| ||||| || | |||| Sbjct 324088 AATCTCCATTGAGGCCGTCAGCGCAGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAG 324147 Query 111004 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || || || || ||||| |||| || | || || |||| || Sbjct 324148 CTGACGAGCCTCGGGAGACTCAAAAGGCATGCGCAGAGCCAGGAAGG-----CATCAGCC 324202 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| || ||||| | |||||| || | ||| ||||| || || || | Sbjct 324203 AGACCCTGGACACCGACACCAATCGGGCGGTGGCGCATGTTGCTGTTGTAGGCCTCCGTG 324262 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || || || || ||||||| ||||| || || | ||| | || ||||| | Sbjct 324263 ACAGGGTAGTGGTTCACATCAATGATGCGGTTCAGGTTGCGGACAACGACCTGTGTGACT 324322 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 111238 |||||||| ||| || | || | || | | | | ||| | || ||||| Sbjct 324323 TCATGAAGCTTTCCAAAGTCGTACTCGCCCTTGTTGTAGTCAACAAATGAGGGCAGGGCA 324382 Query 111239 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 111298 | || |||| ||||| ||||| |||||| | |||||| | ||| || || Sbjct 324383 AGAGAGGCCAGGTTGCACACAGCAACCTCATCGGGGGCACAGTACTCGATAATCTCAGTG 324442 Query 111299 CATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCA 111358 || | |||||| || ||| || |||| ||||| ||||| ||||| |||||| Sbjct 324443 CACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTG 324502 Query 111359 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAA 111418 |||||||| ||||| |||| | || ||||| ||||| | | ||||| || | ||| Sbjct 324503 TCCTTGTAAAGCATAAAGGGATTGCCAGTCTCGGTCTGGGCCTCCAGAATGGCGTACCAC 324562 Query 111419 A-CATCGGCGGCTGGT--ACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAG 111475 | | || | | | | || ||| || | | || || ||| ||||||||| ||| Sbjct 324563 AGCTTCTGAGCTTTGATAACCATG-CG--GCCACGGCCTTCCTTTTCGTACTTTTCGTAC 324619 Query 111476 AGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 111535 || ||||||||||| || || ||| | || || || || || || || | Sbjct 324620 AGAGCTTCAAACTCATCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATC 324679 Query 111536 AGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 |||| ||| | || | ||| |||||| ||||||||||| ||||| |||||||| | Sbjct 324680 AGAGTCCAGT--CCTCGTTCTTCTCAACACGCTTCATGAACAGGTCGCAGATCCACAGAG 324737 Query 111594 --ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 | ||| | || || | ||| ||||||| | || ||||| || | ||||| Sbjct 324738 CCAGGAACA-AG-TCGCGGGCACGAACCTCTTCCTTTCCATGGTTCTTGCGCAGGTCAAG 324795 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC----CCTTTC 111707 |||||| | | || |||||||| || || || || | || | | | || | Sbjct 324796 GAACTCAAACACGTCGGCGTGCCAGGGTTCCAGGTATATAGCAAAGGCACCGGGCCGCTT 324855 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | | ||| | || | |||||||| || ||| ||| || || || | ||| |||| || Sbjct 324856 GTTG-CCACCCTGGTCAACATAGCGGGCCGTGTTGTTGAAGACACGCAACATAGGAACAA 324914 Query 111768 TACC 111771 |||| Sbjct 324915 TACC 324918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031905795200