Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq8 152 6e-32
seq4 100 3e-16
>seq8
Length=1110981
Score = 152 bits (168), Expect = 6e-32
Identities = 694/1081 (64%), Gaps = 31/1081 (3%)
Strand=Plus/Minus
Query 104534 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGG 104593
|||||| |||| ||| | || || || ||| ||| || |||||||| | || | |||
Sbjct 324918 GGTATTGTTCCTATGTTGCGTGTCTTCAACAACACGGCCCGCTATGTTGACCAGGGTGG- 324860
Query 104594 CGTCGAAAGG----GATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGA 104649
| | | || | | | || | || || || || |||||||| || | | ||
Sbjct 324859 CAACAAGCGGCCCGGTGCCTTTGCTATATACCTGGAACCCTGGCACGCCGACGTGTTTGA 324800
Query 104650 GTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTC 104709
||||||||| |||| ||||| || | || |||| || |||||| | |||
Sbjct 324799 GTTCCTTGACCTGCGCAAGAACCATGGAAAGGAAGAGGTTCGTGCCCGCGACTTGTTCCT 324740
Query 104710 CGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCT 104769
||||| ||||| || || ||||||||| | |||||| ||| | | ||| ||||
Sbjct 324739 GGCTCTGTGGATCTGCGACCTGTTCATGAAGCGTGTTGAGAAGAACGAGGACTGGACTCT 324680
Query 104770 CTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCT 104829
| || || || || || || || | || | || || ||||||||||| ||
Sbjct 324679 GATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGATGAGTTTGAAGCTCT 324620
Query 104830 TTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCA--GCTGCCGATG-T 104886
||| ||||||||| | ||||| || | | || | | || ||| | || | |
Sbjct 324619 GTACGAAAAGTACGAAAAGGAAGGCCGTGG--CCGCATGGTTATCAAAGCT-CAGAAGCT 324563
Query 104887 GTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGA 104946
|||| | || ||||| || | || ||||||||||| | || | ||||||||||| ||
Sbjct 324562 GTGGTACGCCATTCTGGAGGCCCAGACCGAGACTGGCAATCCCTTTATGCTTTACAAGGA 324503
Query 104947 CGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTG 105006
| ||| |||| ||||| || || ||||| ||||| || || ||||| || ||
Sbjct 324502 CAGCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCGCAGCTCCAACCTGTG 324443
Query 105007 TACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAAT 105066
|| || || | || | | | |||||| |||||||| ||||| || || |
Sbjct 324442 CACTGAGATTATCGAGTACTGTGCCCCCGATGAGGTTGCTGTGTGCAACCTGGCCTCTCT 324383
Query 105067 CGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT--GATTATGAAAAACTCCAC 105124
|| || ||| | ||| || | | | |||| | | | || | || ||| || ||
Sbjct 324382 TGCCCTGCCCTCATTTGTTGA-CTACA-ACAAGGGCGAGTACGACTTTGGAAAGCTTCAT 324325
Query 105125 GAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCC 105184
||||| || | || | ||||| ||| | | |||||| || |||||
Sbjct 324324 GAAGTCACACAGGTCGTTGTCCGCAACCTGAACCGCATCATTGATGTGAACCACTACCCT 324265
Query 105185 GTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAG 105241
|| ||| | || | | | || ||| | ||||| || |||||| ||||||| |||
Sbjct 324264 GTCACGGAGGC--CTACAACAGC-AACATGCGCCACCGCCCGATTGGTGTCGGTGTCCAG 324208
Query 105242 GGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGA 105300
||||| || |||| ||| | || || ||| | ||||| || ||| || |
Sbjct 324207 GGTCTGGCTGATGCCTTCCTGGCTCTG-CGCATGCCTTTTGAGTCTCCCGAGGCTCGTCA 324149
Query 105301 AATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GA 105357
| || || || ||||||||||| || ||||| || || | || ||| ||
Sbjct 324148 GCTGAACAAGCAGATTTTTGAGACCATCTACCACGCTGCGCT---GACGGCCTCAATGGA 324092
Query 105358 GTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGT 105417
| | || || ||| || |||| || | |||||| || || | || || || |
Sbjct 324091 GATTGCCCAGACTGAGGGCACATACTCTACTTATGAGGGCTCGCCGGTCTCGCAGGGCAT 324032
Query 105418 GCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGAAGCTCTCA 105476
|| |||||||| ||||||| | |||| || ||| || | |||||| | ||||
Sbjct 324031 CCTGCAATTTGACATGTGGG-ATGTGACGCCCAGCGATCTTTGGGACTGGACTTCCCTCA 323973
Query 105477 AGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAG 105536
|||| || ||| || | ||| | || ||| |||||| | || || ||||| || |
Sbjct 323972 AGGAGAAGATTAAGCAGCACGGTGTCCGCAACTCTCTCCTGGTTGCACCCATGCCCACTG 323913
Query 105537 CCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCT 105596
|| || | || ||| ||||||| || || |||||||| |||||||| | ||||| |
Sbjct 323912 CCAGTACGTCGCAGATCCTGGGTAACAACGAGTGCTTTGAGCCCTACACTTCCAACATTT 323853
Query 105597 A 105597
|
Sbjct 323852 A 323852
>seq4
Length=2525909
Score = 100 bits (110), Expect = 3e-16
Identities = 118/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855
||||||| |||| || |||| ||||| || ||||| ||||||||||| || | |
Sbjct 2286879 CCTTTGCCCAGCGCCTGGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTT 2286938
Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915
|| | | || | ||||| ||||| || |||||||| || || |||||||||||
Sbjct 2286939 TCGCCTCCATCTTCTGGCTGCGCAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAACG 2286998
Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||| ||||| ||||||||||| || ||| || |||||
Sbjct 2286999 AGCTGATCTCGCGTGACGAGGGCCTGCACACCGACTTTGC 2287038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260712510880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |