Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8 152 6e-32 seq4 100 3e-16 >seq8 Length=1110981 Score = 152 bits (168), Expect = 6e-32 Identities = 694/1081 (64%), Gaps = 31/1081 (3%) Strand=Plus/Minus Query 104534 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGG 104593 |||||| |||| ||| | || || || ||| ||| || |||||||| | || | ||| Sbjct 324918 GGTATTGTTCCTATGTTGCGTGTCTTCAACAACACGGCCCGCTATGTTGACCAGGGTGG- 324860 Query 104594 CGTCGAAAGG----GATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGA 104649 | | | || | | | || | || || || || |||||||| || | | || Sbjct 324859 CAACAAGCGGCCCGGTGCCTTTGCTATATACCTGGAACCCTGGCACGCCGACGTGTTTGA 324800 Query 104650 GTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTC 104709 ||||||||| |||| ||||| || | || |||| || |||||| | ||| Sbjct 324799 GTTCCTTGACCTGCGCAAGAACCATGGAAAGGAAGAGGTTCGTGCCCGCGACTTGTTCCT 324740 Query 104710 CGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCT 104769 ||||| ||||| || || ||||||||| | |||||| ||| | | ||| |||| Sbjct 324739 GGCTCTGTGGATCTGCGACCTGTTCATGAAGCGTGTTGAGAAGAACGAGGACTGGACTCT 324680 Query 104770 CTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCT 104829 | || || || || || || || | || | || || ||||||||||| || Sbjct 324679 GATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGATGAGTTTGAAGCTCT 324620 Query 104830 TTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCA--GCTGCCGATG-T 104886 ||| ||||||||| | ||||| || | | || | | || ||| | || | | Sbjct 324619 GTACGAAAAGTACGAAAAGGAAGGCCGTGG--CCGCATGGTTATCAAAGCT-CAGAAGCT 324563 Query 104887 GTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGA 104946 |||| | || ||||| || | || ||||||||||| | || | ||||||||||| || Sbjct 324562 GTGGTACGCCATTCTGGAGGCCCAGACCGAGACTGGCAATCCCTTTATGCTTTACAAGGA 324503 Query 104947 CGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTG 105006 | ||| |||| ||||| || || ||||| ||||| || || ||||| || || Sbjct 324502 CAGCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCGCAGCTCCAACCTGTG 324443 Query 105007 TACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAAT 105066 || || || | || | | | |||||| |||||||| ||||| || || | Sbjct 324442 CACTGAGATTATCGAGTACTGTGCCCCCGATGAGGTTGCTGTGTGCAACCTGGCCTCTCT 324383 Query 105067 CGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT--GATTATGAAAAACTCCAC 105124 || || ||| | ||| || | | | |||| | | | || | || ||| || || Sbjct 324382 TGCCCTGCCCTCATTTGTTGA-CTACA-ACAAGGGCGAGTACGACTTTGGAAAGCTTCAT 324325 Query 105125 GAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCC 105184 ||||| || | || | ||||| ||| | | |||||| || ||||| Sbjct 324324 GAAGTCACACAGGTCGTTGTCCGCAACCTGAACCGCATCATTGATGTGAACCACTACCCT 324265 Query 105185 GTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAG 105241 || ||| | || | | | || ||| | ||||| || |||||| ||||||| ||| Sbjct 324264 GTCACGGAGGC--CTACAACAGC-AACATGCGCCACCGCCCGATTGGTGTCGGTGTCCAG 324208 Query 105242 GGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGA 105300 ||||| || |||| ||| | || || ||| | ||||| || ||| || | Sbjct 324207 GGTCTGGCTGATGCCTTCCTGGCTCTG-CGCATGCCTTTTGAGTCTCCCGAGGCTCGTCA 324149 Query 105301 AATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GA 105357 | || || || ||||||||||| || ||||| || || | || ||| || Sbjct 324148 GCTGAACAAGCAGATTTTTGAGACCATCTACCACGCTGCGCT---GACGGCCTCAATGGA 324092 Query 105358 GTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGT 105417 | | || || ||| || |||| || | |||||| || || | || || || | Sbjct 324091 GATTGCCCAGACTGAGGGCACATACTCTACTTATGAGGGCTCGCCGGTCTCGCAGGGCAT 324032 Query 105418 GCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGAAGCTCTCA 105476 || |||||||| ||||||| | |||| || ||| || | |||||| | |||| Sbjct 324031 CCTGCAATTTGACATGTGGG-ATGTGACGCCCAGCGATCTTTGGGACTGGACTTCCCTCA 323973 Query 105477 AGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAG 105536 |||| || ||| || | ||| | || ||| |||||| | || || ||||| || | Sbjct 323972 AGGAGAAGATTAAGCAGCACGGTGTCCGCAACTCTCTCCTGGTTGCACCCATGCCCACTG 323913 Query 105537 CCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCT 105596 || || | || ||| ||||||| || || |||||||| |||||||| | ||||| | Sbjct 323912 CCAGTACGTCGCAGATCCTGGGTAACAACGAGTGCTTTGAGCCCTACACTTCCAACATTT 323853 Query 105597 A 105597 | Sbjct 323852 A 323852 >seq4 Length=2525909 Score = 100 bits (110), Expect = 3e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| |||| || |||| ||||| || ||||| ||||||||||| || | | Sbjct 2286879 CCTTTGCCCAGCGCCTGGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTT 2286938 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 || | | || | ||||| ||||| || |||||||| || || ||||||||||| Sbjct 2286939 TCGCCTCCATCTTCTGGCTGCGCAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAACG 2286998 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| ||||| ||||||||||| || ||| || ||||| Sbjct 2286999 AGCTGATCTCGCGTGACGAGGGCCTGCACACCGACTTTGC 2287038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260712510880