Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 138 3e-27 seq8 113 1e-19 seq10 100 9e-16 >seq3 Length=3916844 Score = 138 bits (152), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| ||||| |||||||| || || || | Sbjct 1905429 TTTGCATACCACCACGGAGACGGAGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGT 1905488 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || |||||||||||||| || || ||||| | Sbjct 1905489 AGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGT 1905548 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || || ||||| || || | || ||||| || |||| || || | Sbjct 1905549 CCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAAG 1905608 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || ||||| || | ||||| ||||| Sbjct 1905609 TTTCCACCTCAAGGGTGATGGTCTTGCCGGT 1905639 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || ||||| ||||| ||||| |||||||| || || || Sbjct 1905205 CATACCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTC 1905264 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || |||||||||||||| || || ||||| || || Sbjct 1905265 GGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGG 1905324 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || |||| || || | || Sbjct 1905325 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTC 1905384 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | |||||||| || || || || || || || ||||| Sbjct 1905385 GACTTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435 Score = 96.9 bits (106), Expect = 1e-14 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 378231 AATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCAT 378290 ||| |||||||||| |||||| || ||||| || || | ||| |||||||| |||| Sbjct 2391572 AATGTAACCAGTTTCGGCAGTTTTCACAGCAGTGTCGATAAGACCCTCACGACCAGCCAT 2391513 Query 378291 TGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCC 378350 ||||||||||| || || | || || || |||| || | || |||| | ||| || Sbjct 2391512 GGCATGGAAGAAGAACTCGCTGGGGGTCAGGCCACGAAGGTAAGAGTTCTCGACAAAGCC 2391453 Query 378351 TCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCC 378410 | || | || || | ||||| || || ||||||| | ||||| | || || || Sbjct 2391452 ACGGGCTTCGGGGGAGTAATCATCCTTGGTGAAATGAGGCAGAGTACGGTACTTGAAACC 2391393 Query 378411 ATATGGAATTCGTTTTCCATCAACATTCTGTTGACC 378446 | | ||||| || || || ||||| | || ||||| Sbjct 2391392 AAAGGGAATACGCTTGCCTTCAACGATTTGCTGACC 2391357 Score = 86.0 bits (94), Expect = 2e-11 Identities = 110/151 (73%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||| | || || |||||||| |||| || || ||| || | ||||| || || Sbjct 2392381 ATTTCCTTAAGACGGGGCACACCCAGTGTGACGTT---TTTGGAAGACACACCGGCGAAA 2392325 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||| || || || || | ||||| | |||||||||||| ||||| || || | ||| Sbjct 2392324 TGGAACGTGTTTAGGGTCATCTGAGTGGCGGGCTCACCAATGGACTGAGCGGCCAAAACA 2392265 Query 377566 CCAACCATTTCTCCAGGATTGACAATAGCCT 377596 || ||||| || ||||| |||| || |||| Sbjct 2392264 CCCACCATCTCACCAGGGTTGATAAATGCCT 2392234 >seq8 Length=1110981 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | ||||| || || || || ||||| || || || || || || Sbjct 478880 ATACCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 478939 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| ||||| || || ||||||||||| || || ||||| || || Sbjct 478940 GACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGG 478999 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || ||||| || || | || || || || |||| || || | || Sbjct 479000 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 479059 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || || |||| ||||| || || || || || || ||| Sbjct 479060 ACCTCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 479101 Score = 113 bits (124), Expect = 1e-19 Identities = 188/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| || ||||| || ||||| || || || | |||||| || || || || || Sbjct 884111 GCTGTCATCACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACTCT 884052 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || ||||| | || || || || ||||||||||| || ||| Sbjct 884051 GGTCTCATTGCTGGCCTGAACGTTCTGCGTATCATCAACGAGCCCACTGCTGCTGCCATT 883992 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 883991 GCCTACGGTCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTGATCTTCGATCTGGGT 883932 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||| ||||| || || || || | || || || || || || || || | Sbjct 883931 GGTGGTACTTTCGATGTCTCGCTGCTGACCATCGAGGATGGTATCTTCGAGGTCAAGTCC 883872 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 || |||||||| || || || ||||| ||||| Sbjct 883871 ACCGCTGGTGACACTCACCTGGGTGGTGAAGA 883840 >seq10 Length=988720 Score = 100 bits (110), Expect = 9e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || ||||| | || || || || || || || || ||||| ||||| Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||| || || ||||| || || || |||||||| || | || ||||| || Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||||| || || |||| ||||| || || || || || || ||| Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 887329 ATCTGCAT 887336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254167029636