Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq3 138 3e-27
seq8 113 1e-19
seq10 100 9e-16
>seq3
Length=3916844
Score = 138 bits (152), Expect = 3e-27
Identities = 157/211 (74%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || ||||| ||||| |||||||| || || || |
Sbjct 1905429 TTTGCATACCACCACGGAGACGGAGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGT 1905488
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| ||||| || |||||||||||||| || || ||||| |
Sbjct 1905489 AGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGT 1905548
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| ||||| || || || || ||||| || || | || ||||| || |||| || || |
Sbjct 1905549 CCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAAG 1905608
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
||| || ||||| || | ||||| |||||
Sbjct 1905609 TTTCCACCTCAAGGGTGATGGTCTTGCCGGT 1905639
Score = 132 bits (146), Expect = 1e-25
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | || || ||||| ||||| ||||| |||||||| || || ||
Sbjct 1905205 CATACCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTC 1905264
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || |||||||||||||| || || ||||| || ||
Sbjct 1905265 GGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGG 1905324
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || || || |||| || || | ||
Sbjct 1905325 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTC 1905384
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || | |||||||| || || || || || || || |||||
Sbjct 1905385 GACTTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435
Score = 96.9 bits (106), Expect = 1e-14
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 378231 AATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCAT 378290
||| |||||||||| |||||| || ||||| || || | ||| |||||||| ||||
Sbjct 2391572 AATGTAACCAGTTTCGGCAGTTTTCACAGCAGTGTCGATAAGACCCTCACGACCAGCCAT 2391513
Query 378291 TGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCC 378350
||||||||||| || || | || || || |||| || | || |||| | ||| ||
Sbjct 2391512 GGCATGGAAGAAGAACTCGCTGGGGGTCAGGCCACGAAGGTAAGAGTTCTCGACAAAGCC 2391453
Query 378351 TCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCC 378410
| || | || || | ||||| || || ||||||| | ||||| | || || ||
Sbjct 2391452 ACGGGCTTCGGGGGAGTAATCATCCTTGGTGAAATGAGGCAGAGTACGGTACTTGAAACC 2391393
Query 378411 ATATGGAATTCGTTTTCCATCAACATTCTGTTGACC 378446
| | ||||| || || || ||||| | || |||||
Sbjct 2391392 AAAGGGAATACGCTTGCCTTCAACGATTTGCTGACC 2391357
Score = 86.0 bits (94), Expect = 2e-11
Identities = 110/151 (73%), Gaps = 3/151 (2%)
Strand=Plus/Minus
Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505
||||| | || || |||||||| |||| || || ||| || | ||||| || ||
Sbjct 2392381 ATTTCCTTAAGACGGGGCACACCCAGTGTGACGTT---TTTGGAAGACACACCGGCGAAA 2392325
Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565
||||| || || || || | ||||| | |||||||||||| ||||| || || | |||
Sbjct 2392324 TGGAACGTGTTTAGGGTCATCTGAGTGGCGGGCTCACCAATGGACTGAGCGGCCAAAACA 2392265
Query 377566 CCAACCATTTCTCCAGGATTGACAATAGCCT 377596
|| ||||| || ||||| |||| || ||||
Sbjct 2392264 CCCACCATCTCACCAGGGTTGATAAATGCCT 2392234
>seq8
Length=1110981
Score = 113 bits (124), Expect = 1e-19
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567
||||||||||| | | ||||| || || || || ||||| || || || || || ||
Sbjct 478880 ATACCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 478939
Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627
|| | || || ||||| ||||| || || ||||||||||| || || ||||| || ||
Sbjct 478940 GACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGG 478999
Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687
||||| || || || ||||| || || | || || || || |||| || || | ||
Sbjct 479000 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 479059
Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| || || |||| ||||| || || || || || || |||
Sbjct 479060 ACCTCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 479101
Score = 113 bits (124), Expect = 1e-19
Identities = 188/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
||||| || ||||| || ||||| || || || | |||||| || || || || ||
Sbjct 884111 GCTGTCATCACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACTCT 884052
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| |||||| || | || ||||| | || || || || ||||||||||| || |||
Sbjct 884051 GGTCTCATTGCTGGCCTGAACGTTCTGCGTATCATCAACGAGCCCACTGCTGCTGCCATT 883992
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
|| || || ||||| || | | || || || | || || || ||| | |||
Sbjct 883991 GCCTACGGTCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTGATCTTCGATCTGGGT 883932
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
||||||||||| ||||| || || || || | || || || || || || || || |
Sbjct 883931 GGTGGTACTTTCGATGTCTCGCTGCTGACCATCGAGGATGGTATCTTCGAGGTCAAGTCC 883872
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881
|| |||||||| || || || ||||| |||||
Sbjct 883871 ACCGCTGGTGACACTCACCTGGGTGGTGAAGA 883840
>seq10
Length=988720
Score = 100 bits (110), Expect = 9e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || || || || ||||| | || || || || || || || || ||||| |||||
Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| || ||||| || || ||||| || || || |||||||| || | || ||||| ||
Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | || || | ||||| || || |||| ||||| || || || || || || |||
Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 887329 ATCTGCAT 887336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515254167029636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |