Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8 224 1e-53 seq4 154 2e-32 seq3 122 1e-22 >seq8 Length=1110981 Score = 224 bits (248), Expect = 1e-53 Identities = 387/556 (70%), Gaps = 12/556 (2%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289 |||||| | ||||| ||| || | ||| ||| |||| |||||| || || | || Sbjct 325177 GCGTGTTCTCGAGACTTACAACCTCATGTCGAGC---AAGTTCTTTACCCATGCGTCTCC 325121 Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349 || || |||||||| ||||| ||| | ||| |||| ||||| || || | || Sbjct 325120 CACTCTCTTCAACGCCGGTACCCCTCAGGCCCAGCTGTCTTCATGCTTTCTAGTCGACAT 325061 Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409 |||||| ||| || || ||||| ||||| || |||||| ||||| |||||||| Sbjct 325060 GAAGGACGACAGCATTGAGGGCATTTACGATACCCTCAAGACTTGTGCTATGATCTCCAA 325001 Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATC 53467 | | | || || |||||| || || || | || | ||||| | ||| | || Sbjct 325000 GATGGCTGGCGGCATCGGTCTCAACG--TCCACCGCATTCGTGCCACTGGCTCCTACATT 324943 Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527 || || ||||| | || | || || || |||||| | || ||||||||||||||| Sbjct 324942 GCCGGCACCAACGGTACCTCCAACGGTATTGTTCCTATGTTGCGTGTCTTCAACAACACG 324883 Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587 ||||| || || |||||||||| ||||| || | || || || ||||| || Sbjct 324882 GCCCGCTATGTTGACCAGGGTGGCAACAAGCGGCCCGGTGCCTTTGCTATATACCTGGAA 324823 Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647 || |||||||||||| | | ||||| || || ||||| ||| || || | |||||| Sbjct 324822 CCCTGGCACGCCGACGTGTTTGAGTTCCTTGACCTGCGCAAGAACCATGGAAAGGAAGAG 324763 Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707 | || ||| ||| |||| ||||||||||| ||||| |||||| | || Sbjct 324762 GTTCGTGCCCGCGACTTGTTCCTGGCTCTGTGGATCTGCGACCTGTTCATGAAGCGTGTT 324703 Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGT 53766 |||||| ||||||| ||| ||||||||||| ||||||||||||||||| | | || Sbjct 324702 GAGAAGAACGAGGACTGGACTCTGATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTG- 324644 Query 53767 CTACGGTGAGGAGTTT 53782 |||||| || |||||| Sbjct 324643 CTACGGCGATGAGTTT 324628 >seq4 Length=2525909 Score = 154 bits (170), Expect = 2e-32 Identities = 557/851 (65%), Gaps = 44/851 (5%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||| || || ||||||||||| || | | ||||||||||||||| Sbjct 2287326 TAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATA 2287267 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAG- 74578 |||| || ||||| | || | ||| | ||| || || | | || | ||| Sbjct 2287266 AAGTCAAAGGGGTTGGTGGCGCGGTAGAC---CTTTTCGTTTCCGA---GGGCGACGAGC 2287213 Query 74579 --GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636 ||| || || || || | |||||||||| |||| | || | |||||||| ||| Sbjct 2287212 AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGGAGG 2287153 Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--A 74694 || ||||| |||||||| | ||||| |||| | || ||| || || | | Sbjct 2287152 CCACAGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGC--ATCGGTGATGA 2287095 Query 74695 TCTTGT-GAATGTCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750 ||| | || | || ||| |||| || | | ||||| ||| | ||| | || | Sbjct 2287094 TCTGCTCGACTAGCTGCTTGCTGGGGCGGTTGT---TGAGGTGCGAGAACAGCAGACA-G 2287039 Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| || ||| ||| || || | |||| || || || || | |||||| Sbjct 2287038 GCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCA 2286979 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || || ||||| || ||| ||||||| ||| | || |||||||||| Sbjct 2286978 GGCATGAGGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAGATG 2286919 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATC 74927 || ||||| ||||||||||| ||||| || || || || | | | || ||| Sbjct 2286918 CCCTCGACGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGGTCGACTCCTTGTCGGTGATC 2286859 Query 74928 CAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAA 74986 || | | ||||| || || || || || ||| |||| |||||||| || | ||| Sbjct 2286858 CACTTGAGGGCCCAGTCGGCCTTGCGGCGGA-TGCACGGGATGGTATCGATGGCGTTGAA 2286800 Query 74987 GAGGCTTGCCTTCTCTTC--GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTC 75044 |||| | | | || | ||| ||||||| | |||| |||| || ||||||||| Sbjct 2286799 GAGG--TAGGTGCGCTGCGAGGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTACGTC 2286742 Query 75045 TCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATC 75104 || || || || ||| | | |||| | ||||||| | || ||||| | ||| Sbjct 2286741 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 2286682 Query 75105 TGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCG 75164 || || || || ||| | | ||| ||||| ||||||||||||| || |||||| Sbjct 2286681 TGGACCTCGCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCGGCG 2286622 Query 75165 AAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC----GTCAGTGAGTTTGTCCCA 75220 || || || || | ||| |||| | ||||| |||| | | |||| ||| Sbjct 2286621 AAGAAGGCGAGGATGTGCGAGATGAAGTACTGTTCATCCTTGTTCAG-GCGGTTGTTCCA 2286563 Query 75221 ATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATC-GC 75277 || | |||||| | || ||||| |||||| | |||||||| || || || || Sbjct 2286562 GTCGTGAAGGTCCTTGGACAGGTCAATTTCCTCGGCAGTCCAGAAGGACGCC---TCGGC 2286506 Query 75278 CTTTTTGTACA 75288 ||| ||||||| Sbjct 2286505 CTTCTTGTACA 2286495 >seq3 Length=3916844 Score = 122 bits (134), Expect = 1e-22 Identities = 186/263 (71%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 117311 ATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTC 117370 || ||||||| | |||||||| |||||||| |||||||| ||| || | ||||| Sbjct 3035429 ATATAACGAGCGGAAGCAGCATCAGAGCCACCAGAAAGACGCGAACCAAAGTTACCACTG 3035488 Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTA 117430 || |||||| ||| | || || | ||||||||| | ||||||| | | ||| || Sbjct 3035489 GGTTCCAAGCAGTTGACATTATTAGAACCCACAAAGGTCTGAGCCAGGCCAATAATTGTT 3035548 Query 117431 CCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGC 117490 || || | ||||||| || || || | || || | | ||||| || |||| | Sbjct 3035549 TGCTGCAGAGACACCTCACCGTGTTGGTAGGAGGTATGTCCAGAAACGTAACCAGCCAAC 3035608 Query 117491 TGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGC 117548 | | ||||||||||||| ||| || ||| || ||| |||||| ||||| ||||||| Sbjct 3035609 TCAACCACCTTCATGTCCTGGAC--CACGTTTTTGCTGAAGCAGGCGTAAATGACCTTGC 3035666 Query 117549 GCTGACTTGGCTTCAGACCATCC 117571 | |||| || |||| |||||| Sbjct 3035667 GTTGACCAGGTTTCAACCCATCC 3035689 Score = 89.7 bits (98), Expect = 6e-13 Identities = 168/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 || ||||| |||||| | || |||| ||||| | ||| ||| || | | |||| Sbjct 3035444 GCAGCATCAGAGCCACCAGAAAGACGCGAACCAAAGTTACCACTGGGTTCCAAGCAGTTG 3035503 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 | || || | ||||| || ||||||||| | ||| || ||||||| | | Sbjct 3035504 ACATTATTAGAACCCACAAAGGTCTGAGCCAGGCCAATAATTGTTTGCTGCAGAGACACC 3035563 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || || | || || | | | ||| || ||||||| ||||||||||| Sbjct 3035564 TCACCGTGTTGGTAGGAGGTATGTCCAGAAACGTAACCAGCCAACTCAACCACCTTCATG 3035623 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| || ||| || ||| ||||||||||| |||||||| || |||||||| Sbjct 3035624 TCCTGGACCACGTTTTTGCTGAAGCAGGCGTAAATGACCTTGCGTTGACCAGGTTTCAAC 3035683 Query 152290 CCGTCCA 152296 || |||| Sbjct 3035684 CCATCCA 3035690 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 118172 GCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCC 118231 || || || ||||| || |||||| || || ||||| || || | ||| || || Sbjct 3036338 GCATCGCGTACGTTCAGCATCTTACCACGAAGAGGAAATACACCGATGCGATCAGGGTCC 3036397 Query 118232 ACAA-CGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAG 118290 | || ||| | | ||||||| ||| | | ||| |||||||||||||| || | ||| || Sbjct 3036398 AGAATCGCACGA-CCGGCAACAGCCAAGCTCTTGGCCGAGTCACCCTCAGTCAGAATCAG 3036456 Query 118291 AGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTT 118341 |||||| || || | |||| |||||| ||||||||||| ||| ||| Sbjct 3036457 AGTGCATTCATGGCCATGCCGAGTTCCGGCCAAATTAGCATCAACCAACTT 3036507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215917917600