Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq8 224 1e-53
seq4 154 2e-32
seq3 122 1e-22
>seq8
Length=1110981
Score = 224 bits (248), Expect = 1e-53
Identities = 387/556 (70%), Gaps = 12/556 (2%)
Strand=Plus/Minus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289
|||||| | ||||| ||| || | ||| ||| |||| |||||| || || | ||
Sbjct 325177 GCGTGTTCTCGAGACTTACAACCTCATGTCGAGC---AAGTTCTTTACCCATGCGTCTCC 325121
Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349
|| || |||||||| ||||| ||| | ||| |||| ||||| || || | ||
Sbjct 325120 CACTCTCTTCAACGCCGGTACCCCTCAGGCCCAGCTGTCTTCATGCTTTCTAGTCGACAT 325061
Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409
|||||| ||| || || ||||| ||||| || |||||| ||||| ||||||||
Sbjct 325060 GAAGGACGACAGCATTGAGGGCATTTACGATACCCTCAAGACTTGTGCTATGATCTCCAA 325001
Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATC 53467
| | | || || |||||| || || || | || | ||||| | ||| | ||
Sbjct 325000 GATGGCTGGCGGCATCGGTCTCAACG--TCCACCGCATTCGTGCCACTGGCTCCTACATT 324943
Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527
|| || ||||| | || | || || || |||||| | || |||||||||||||||
Sbjct 324942 GCCGGCACCAACGGTACCTCCAACGGTATTGTTCCTATGTTGCGTGTCTTCAACAACACG 324883
Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587
||||| || || |||||||||| ||||| || | || || || ||||| ||
Sbjct 324882 GCCCGCTATGTTGACCAGGGTGGCAACAAGCGGCCCGGTGCCTTTGCTATATACCTGGAA 324823
Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647
|| |||||||||||| | | ||||| || || ||||| ||| || || | ||||||
Sbjct 324822 CCCTGGCACGCCGACGTGTTTGAGTTCCTTGACCTGCGCAAGAACCATGGAAAGGAAGAG 324763
Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707
| || ||| ||| |||| ||||||||||| ||||| |||||| | ||
Sbjct 324762 GTTCGTGCCCGCGACTTGTTCCTGGCTCTGTGGATCTGCGACCTGTTCATGAAGCGTGTT 324703
Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGT 53766
|||||| ||||||| ||| ||||||||||| ||||||||||||||||| | | ||
Sbjct 324702 GAGAAGAACGAGGACTGGACTCTGATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTG- 324644
Query 53767 CTACGGTGAGGAGTTT 53782
|||||| || ||||||
Sbjct 324643 CTACGGCGATGAGTTT 324628
>seq4
Length=2525909
Score = 154 bits (170), Expect = 2e-32
Identities = 557/851 (65%), Gaps = 44/851 (5%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || || || ||||| || || ||||||||||| || | | |||||||||||||||
Sbjct 2287326 TAGTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATA 2287267
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAG- 74578
|||| || ||||| | || | ||| | ||| || || | | || | |||
Sbjct 2287266 AAGTCAAAGGGGTTGGTGGCGCGGTAGAC---CTTTTCGTTTCCGA---GGGCGACGAGC 2287213
Query 74579 --GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636
||| || || || || | |||||||||| |||| | || | |||||||| |||
Sbjct 2287212 AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGGAGG 2287153
Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--A 74694
|| ||||| |||||||| | ||||| |||| | || ||| || || | |
Sbjct 2287152 CCACAGGGCAGGGCCTCGGTCAGGAACTCCTTCTCAATGACGACAGC--ATCGGTGATGA 2287095
Query 74695 TCTTGT-GAATGTCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750
||| | || | || ||| |||| || | | ||||| ||| | ||| | || |
Sbjct 2287094 TCTGCTCGACTAGCTGCTTGCTGGGGCGGTTGT---TGAGGTGCGAGAACAGCAGACA-G 2287039
Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810
||||| || ||| ||| || || | |||| || || || || | ||||||
Sbjct 2287038 GCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCA 2286979
Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870
||||| || || ||||| || ||| ||||||| ||| | || ||||||||||
Sbjct 2286978 GGCATGAGGCCGCGCTTGCGCAGCCAGAAGATGGAGGCGAAAGCGCCCGAGAAGAAGATG 2286919
Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATC 74927
|| ||||| ||||||||||| ||||| || || || || | | | || |||
Sbjct 2286918 CCCTCGACGGCGGCAAAGGCGACCAGGCGCTGGGCAAAGGTCGACTCCTTGTCGGTGATC 2286859
Query 74928 CAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAA 74986
|| | | ||||| || || || || || ||| |||| |||||||| || | |||
Sbjct 2286858 CACTTGAGGGCCCAGTCGGCCTTGCGGCGGA-TGCACGGGATGGTATCGATGGCGTTGAA 2286800
Query 74987 GAGGCTTGCCTTCTCTTC--GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTC 75044
|||| | | | || | ||| ||||||| | |||| |||| || |||||||||
Sbjct 2286799 GAGG--TAGGTGCGCTGCGAGGGCTCCTTGATGTAAGTGTCGATCAGCAGCGAGTACGTC 2286742
Query 75045 TCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATC 75104
|| || || || ||| | | |||| | ||||||| | || ||||| | |||
Sbjct 2286741 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 2286682
Query 75105 TGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCG 75164
|| || || || ||| | | ||| ||||| ||||||||||||| || ||||||
Sbjct 2286681 TGGACCTCGCCGGAGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCGGATGCGGCG 2286622
Query 75165 AAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC----GTCAGTGAGTTTGTCCCA 75220
|| || || || | ||| |||| | ||||| |||| | | |||| |||
Sbjct 2286621 AAGAAGGCGAGGATGTGCGAGATGAAGTACTGTTCATCCTTGTTCAG-GCGGTTGTTCCA 2286563
Query 75221 ATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATC-GC 75277
|| | |||||| | || ||||| |||||| | |||||||| || || || ||
Sbjct 2286562 GTCGTGAAGGTCCTTGGACAGGTCAATTTCCTCGGCAGTCCAGAAGGACGCC---TCGGC 2286506
Query 75278 CTTTTTGTACA 75288
||| |||||||
Sbjct 2286505 CTTCTTGTACA 2286495
>seq3
Length=3916844
Score = 122 bits (134), Expect = 1e-22
Identities = 186/263 (71%), Gaps = 4/263 (2%)
Strand=Plus/Plus
Query 117311 ATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTC 117370
|| ||||||| | |||||||| |||||||| |||||||| ||| || | |||||
Sbjct 3035429 ATATAACGAGCGGAAGCAGCATCAGAGCCACCAGAAAGACGCGAACCAAAGTTACCACTG 3035488
Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTA 117430
|| |||||| ||| | || || | ||||||||| | ||||||| | | ||| ||
Sbjct 3035489 GGTTCCAAGCAGTTGACATTATTAGAACCCACAAAGGTCTGAGCCAGGCCAATAATTGTT 3035548
Query 117431 CCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGC 117490
|| || | ||||||| || || || | || || | | ||||| || |||| |
Sbjct 3035549 TGCTGCAGAGACACCTCACCGTGTTGGTAGGAGGTATGTCCAGAAACGTAACCAGCCAAC 3035608
Query 117491 TGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGC 117548
| | ||||||||||||| ||| || ||| || ||| |||||| ||||| |||||||
Sbjct 3035609 TCAACCACCTTCATGTCCTGGAC--CACGTTTTTGCTGAAGCAGGCGTAAATGACCTTGC 3035666
Query 117549 GCTGACTTGGCTTCAGACCATCC 117571
| |||| || |||| ||||||
Sbjct 3035667 GTTGACCAGGTTTCAACCCATCC 3035689
Score = 89.7 bits (98), Expect = 6e-13
Identities = 168/247 (68%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109
|| ||||| |||||| | || |||| ||||| | ||| ||| || | | ||||
Sbjct 3035444 GCAGCATCAGAGCCACCAGAAAGACGCGAACCAAAGTTACCACTGGGTTCCAAGCAGTTG 3035503
Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169
| || || | ||||| || ||||||||| | ||| || ||||||| | |
Sbjct 3035504 ACATTATTAGAACCCACAAAGGTCTGAGCCAGGCCAATAATTGTTTGCTGCAGAGACACC 3035563
Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229
|||||||| || || | || || | | | ||| || ||||||| |||||||||||
Sbjct 3035564 TCACCGTGTTGGTAGGAGGTATGTCCAGAAACGTAACCAGCCAACTCAACCACCTTCATG 3035623
Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289
||| || ||| || ||| ||||||||||| |||||||| || ||||||||
Sbjct 3035624 TCCTGGACCACGTTTTTGCTGAAGCAGGCGTAAATGACCTTGCGTTGACCAGGTTTCAAC 3035683
Query 152290 CCGTCCA 152296
|| ||||
Sbjct 3035684 CCATCCA 3035690
Score = 86.0 bits (94), Expect = 7e-12
Identities = 123/171 (72%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 118172 GCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCC 118231
|| || || ||||| || |||||| || || ||||| || || | ||| || ||
Sbjct 3036338 GCATCGCGTACGTTCAGCATCTTACCACGAAGAGGAAATACACCGATGCGATCAGGGTCC 3036397
Query 118232 ACAA-CGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAG 118290
| || ||| | | ||||||| ||| | | ||| |||||||||||||| || | ||| ||
Sbjct 3036398 AGAATCGCACGA-CCGGCAACAGCCAAGCTCTTGGCCGAGTCACCCTCAGTCAGAATCAG 3036456
Query 118291 AGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTT 118341
|||||| || || | |||| |||||| ||||||||||| ||| |||
Sbjct 3036457 AGTGCATTCATGGCCATGCCGAGTTCCGGCCAAATTAGCATCAACCAACTT 3036507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215917917600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |